Skip to content

2.3.0
Compare
Choose a tag to compare
@effigies effigies released this 12 Jun 17:15
· 2456 commits to master since this release
2.3.0
1ea6392
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

DOI

New feature release for the 2.3 series.

Most work on NiBabel so far has been by Matthew Brett (MB), Michael Hanke (MH)
Ben Cipollini (BC), Marc-Alexandre Côté (MC), Chris Markiewicz (CM), Stephan
Gerhard (SG) and Eric Larson (EL).

References like "pr/298" refer to github pull request numbers.

New features

  • TRK <=> TCK streamlines conversion CLI tools (pr/606) (MC, reviewed by CM)
  • Image slicing for SpatialImages (pr/550) (CM)

Enhancements

  • Simplfiy MGHImage and add footer fields (pr/569) (CM, reviewed by MB)
  • Force sform/qform codes to be ints, rather than numpy types (pr/575) (Paul
    McCarthy, reviewed by MB, CM)
  • Auto-fill color table in FreeSurfer annotation file (pr/592) (Paul McCarthy,
    reviewed by CM, MB)
  • Set default intent code for CIFTI2 images (pr/604) (Mathias Goncalves,
    reviewed by CM, Satra Ghosh, MB, Tim Coalson)
  • Raise informative error on empty files (pr/611) (Pradeep Raamana, reviewed
    by CM, MB)
  • Accept degenerate filenames such as .nii (pr/621) (Dimitri
    Papadopoulos-Orfanos, reviewed by Yaroslav Halchenko)
  • Take advantage of IndexedGzipFile drop_handles flag to release
    filehandles by default (pr/614) (Paul McCarthy, reviewed by CM, MB)

Bug fixes

  • Preserve first point of LazyTractogram (pr/588) (MC, reviewed by Nil
    Goyette, CM, MB)
  • Stop adding extraneous metadata padding (pr/593) (Jon Stutters, reviewed by
    CM, MB)
  • Accept lower-case orientation codes in TRK files (pr/600) (Kesshi Jordan,
    MB, reviewed by MB, MC, CM)
  • Annotation file reading (pr/592) (Paul McCarthy, reviewed by CM, MB)
  • Fix buffer size calculation in ArraySequence (pr/597) (Serge Koudoro,
    reviewed by MC, MB, Eleftherios Garyfallidis, CM)
  • Resolve UnboundLocalError in Python 3 (pr/607) (Jakub Kaczmarzyk,
    reviewed by MB, CM)
  • Do not crash on non-ImportError failures in optional imports (pr/618)
    (Yaroslav Halchenko, reviewed by CM)
  • Return original array from get_fdata for array image, if no cast
    required (pr/638, MB, reviewed by CM)

Maintenance

  • Use SSH address to use key-based auth (pr/587) (CM, reviewed by MB)
  • Fix doctests for numpy 1.14 array printing (pr/591) (MB, reviewed by CM)
  • Refactor for pydicom 1.0 API changes (pr/599) (MB, reviewed by CM)
  • Increase test coverage, remove unreachable code (pr/602) (CM, reviewed by
    Yaroslav Halchenko, MB)
  • Move nib-ls and other programs to a new cmdline module (pr/601, pr/615)
    (Chris Cheng, reviewed by MB, Yaroslav Halchenko)
  • Remove deprecated numpy indexing (EL, reviewed by CM)
  • Update documentation to encourage get_fdata over get_data (pr/637,
    MB, reviewed by CM)

API changes and deprecations

  • Support for keep_file_open = 'auto' as a parameter to Opener() will
    be deprecated in 2.4, for removal in 3.0. Accordingly, support for
    openers.KEEP_FILE_OPEN_DEFAULT = 'auto' will be dropped on the same
    schedule.
  • Drop-in support for indexed_gzip < 0.7 has been removed.
Assets 2
Loading