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DOC: codespell fix a few typos in code comments #605

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merged 1 commit into from
Nov 3, 2022
Merged

DOC: codespell fix a few typos in code comments #605

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2 changes: 1 addition & 1 deletion heudiconv/heuristics/multires_7Tbold.py
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ def extract_moco_params(basename, outypes, dicoms):
dcm_times = [(d,
float(dcm_read(d, stop_before_pixels=True).AcquisitionTime))
for d in dicoms]
# store MoCo info from image comments sorted by acqusition time
# store MoCo info from image comments sorted by acquisition time
moco = ['\t'.join(
[str(float(i)) for i in dcm_read(fn, stop_before_pixels=True).ImageComments.split()[1].split(',')])
for fn, t in sorted(dcm_times, key=lambda x: x[1])]
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4 changes: 2 additions & 2 deletions heudiconv/tests/test_heuristics.py
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Expand Up @@ -45,7 +45,7 @@ def test_smoke_convertall(tmpdir):
@pytest.mark.parametrize('heuristic', ['reproin', 'convertall'])
@pytest.mark.parametrize(
'invocation', [
"--files %s" % TESTS_DATA_PATH, # our new way with automated groupping
"--files %s" % TESTS_DATA_PATH, # our new way with automated grouping
"-d %s/{subject}/* -s 01-fmap_acq-3mm" % TESTS_DATA_PATH # "old" way specifying subject
# should produce the same results
])
Expand Down Expand Up @@ -106,7 +106,7 @@ def test_reproin_largely_smoke(tmpdir, heuristic, invocation):

@pytest.mark.parametrize(
'invocation', [
"--files %s" % TESTS_DATA_PATH, # our new way with automated groupping
"--files %s" % TESTS_DATA_PATH, # our new way with automated grouping
])
def test_scans_keys_reproin(tmpdir, invocation):
args = "-f reproin -c dcm2niix -o %s -b " % (tmpdir)
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2 changes: 1 addition & 1 deletion heudiconv/tests/test_queue.py
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Expand Up @@ -10,7 +10,7 @@
@pytest.mark.skipif(bool(which("sbatch")), reason="skip a real slurm call")
@pytest.mark.parametrize(
'invocation', [
"--files %s/01-fmap_acq-3mm" % TESTS_DATA_PATH, # our new way with automated groupping
"--files %s/01-fmap_acq-3mm" % TESTS_DATA_PATH, # our new way with automated grouping
"-d %s/{subject}/* -s 01-fmap_acq-3mm" % TESTS_DATA_PATH # "old" way specifying subject
])
def test_queue_no_slurm(tmpdir, invocation):
Expand Down