RF: drop Python 3.6 (EOLed), fix dcm2niix version in neurodocker script

.travis.yml

@@ -2,10 +2,11 @@
 language: python
 dist: bionic
 python:
-  - 3.6
   - 3.7
   - 3.8
   - 3.9
+  # causes issues, disabled for now
+  # - '3.10'
 
 cache:
   - apt

Dockerfile

@@ -1,5 +1,5 @@
 # Generated by Neurodocker version 0.4.2-3-gf7055a1
-# Timestamp: 2018-11-13 22:04:04 UTC
+# Timestamp: 2022-04-04 17:55:39 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -90,12 +90,12 @@ RUN export PATH="/opt/miniconda-latest/bin:$PATH" \
     && conda config --system --set show_channel_urls true \
     && sync && conda clean -tipsy && sync \
     && conda install -y -q --name base \
-           'python=3.6' \
+           'python=3.7' \
            'traits>=4.6.0' \
            'scipy' \
            'numpy' \
-           'pandas' \
            'nomkl' \
+           'pandas' \
     && sync && conda clean -tipsy && sync \
     && bash -c "source activate base \
     &&   pip install --no-cache-dir --editable \
@@ -143,12 +143,12 @@ RUN echo '{ \
     \n      { \
     \n        "use_env": "base", \
     \n        "conda_install": [ \
-    \n          "python=3.6", \
+    \n          "python=3.7", \
     \n          "traits>=4.6.0", \
     \n          "scipy", \
     \n          "numpy", \
-    \n          "pandas", \
-    \n          "nomkl" \
+    \n          "nomkl", \
+    \n          "pandas" \
     \n        ], \
     \n        "pip_install": [ \
     \n          "/src/heudiconv[all]" \

heudiconv/info.py

@@ -12,14 +12,15 @@
     'Environment :: Console',
     'Intended Audience :: Science/Research',
     'License :: OSI Approved :: Apache Software License',
-    'Programming Language :: Python :: 3.6',
     'Programming Language :: Python :: 3.7',
     'Programming Language :: Python :: 3.8',
     'Programming Language :: Python :: 3.9',
+    # needs fixing
+    # 'Programming Language :: Python :: 3.10',
     'Topic :: Scientific/Engineering'
 ]
 
-PYTHON_REQUIRES = ">=3.6"
+PYTHON_REQUIRES = ">=3.7"
 
 REQUIRES = [
     'nibabel',

utils/gen-docker-image.sh

@@ -7,10 +7,10 @@ VER=$(grep -Po '(?<=^__version__ = ).*' ../heudiconv/info.py | sed 's/"//g')
 image="kaczmarj/neurodocker:master@sha256:936401fe8f677e0d294f688f352cbb643c9693f8de371475de1d593650e42a66"
 
 docker run --rm $image generate docker -b neurodebian:stretch -p apt \
-    --dcm2niix version=v1.0.20180622 method=source \
+    --dcm2niix version=v1.0.20190410 method=source \
     --install git gcc pigz liblzma-dev libc-dev git-annex-standalone netbase \
     --copy . /src/heudiconv \
-    --miniconda use_env=base conda_install="python=3.6 traits>=4.6.0 scipy numpy nomkl pandas" \
+    --miniconda use_env=base conda_install="python=3.7 traits>=4.6.0 scipy numpy nomkl pandas" \
       pip_install="/src/heudiconv[all]" \
       pip_opts="--editable" \
     --entrypoint "heudiconv" \