ENH: Higher-level carpetplot tooling for DWI #391
Workflow file for this run
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| name: Build-Test-Deploy | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - maint/* | |
| tags: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - main | |
| - maint/* | |
| schedule: | |
| # 8am EST / 9am EDT Mondays | |
| - cron: '0 13 * * 1' | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| if: | | |
| github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| || ! contains(github.event.head_commit.message, '[skip ci]') | |
| runs-on: 'ubuntu-latest' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Install build dependencies | |
| run: pip install --upgrade pip build twine | |
| - name: Build sdist and wheel | |
| run: python -m build -s -w | |
| - name: Check distributions | |
| run: twine check dist/* | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: dist | |
| path: dist/ | |
| test: | |
| needs: [build] | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| #os: ['ubuntu-latest', 'windows-latest', 'macos-latest'] | |
| os: ['ubuntu-latest'] | |
| python-version: [3.8, 3.9, '3.10', '3.11', '3.12'] | |
| architecture: ['x64', 'x86'] | |
| package: ['.', 'dist/*.whl', 'dist/*.tar.gz'] | |
| exclude: | |
| # 32-bit is a Windows-only consideration | |
| - os: ubuntu-latest | |
| architecture: x86 | |
| - os: macos-latest | |
| architecture: x86 | |
| # Only run newest on Windows/Mac | |
| - os: windows-latest | |
| python-version: 3.8 | |
| - os: windows-latest | |
| python-version: 3.9 | |
| - os: macos-latest | |
| python-version: 3.8 | |
| - os: macos-latest | |
| python-version: 3.9 | |
| # Skip 32-bit Windows with Python 3.10 (see #42) | |
| - os: windows-latest | |
| architecture: x86 | |
| python-version: 3.10 | |
| env: | |
| PACKAGE: ${{ matrix.package }} | |
| TEMPLATEFLOW_HOME: /tmp/templateflow | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Fetch packages | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: dist | |
| path: dist/ | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: ${{ matrix.architecture }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - uses: actions/cache@v4 | |
| with: | |
| path: /var/lib/apt | |
| key: apt-cache-v0 | |
| restore-keys: | | |
| apt-cache-v0 | |
| - name: Install tex | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y --no-install-recommends dvipng texlive texlive-latex-extra cm-super | |
| - name: Install package | |
| run: pip install $PACKAGE | |
| - name: Verify installation | |
| run: python -c "import nireports; print(nireports.__version__)" | |
| - name: Install test dependencies | |
| run: pip install .[test] | |
| - name: Restore cached templateflow | |
| id: tf-cache-restore | |
| uses: actions/cache/restore@v4 | |
| with: | |
| path: /tmp/templateflow | |
| key: templateflow-v1 | |
| - name: Fetch templates | |
| run: | | |
| python -c "from templateflow.api import get; get('Fischer344', desc=None, suffix='T2w')" | |
| python -c "from templateflow.api import get; get('MNI152NLin6Asym', resolution=2, desc='LR', suffix='T1w')" | |
| - name: Save templateflow cache | |
| id: tf-cache-save | |
| uses: actions/cache/save@v4 | |
| with: | |
| path: /tmp/templateflow | |
| key: ${{ steps.tf-cache-restore.outputs.cache-primary-key }} | |
| - name: Run tests | |
| run: pytest --cov nireports nireports | |
| - uses: codecov/codecov-action@v4 | |
| if: ${{ always() }} | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| deploy: | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| needs: [test] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Fetch packages | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: dist | |
| path: dist/ | |
| - name: Upload to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} |