ENH: Port bbregister T1-to-dwi registration from fmriprep

[slimnsour]

Hello, this is to address #115 by adding bbregister to dmriprep. As you can see there is a little more work to be done because I wanted feedback on some things. Specifically:

1. Is there a best place I should put this workflow in? Ex. dmriprep/workflows/dwi/base.py or dmriprep/workflows/dwi/registration.py?
2. How should I import init_bbreg_wf in this case? I would have just imported init_bbreg_wf from fmriprep but fmriprep is not part of the packages installed in dmriprep. What is the suggested practice here?

Let me know of any feedback and I'll get to them.

[welcome]

Thanks for opening this pull request! We have detected this is the first time for you to contribute to dMRIPrep. Please check out our contributing guidelines.
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[oesteban]

Looking great - I think we can import the init_bbreg_wf from fMRIPrep (I'll move it to smriprep or niworkflows, so that we do not depend on fmriprep). Please confirm.

[pep8speaks]

Hello @slimnsour, Thank you for updating!

Cheers! There are no style issues detected in this Pull Request. 🍻 To test for issues locally, pip install flake8 and then run flake8 dmriprep.

Comment last updated at 2020-12-04 17:26:32 UTC

[oesteban]

I'm going to add three stupid changes to your comments. Thanks for your understanding.

[oesteban]

@slimnsour please add your info to

dmriprep/.maint/developers.json

Lines 17 to 29 in 7002869

	{
	"affiliation": [
	"Basque Center on Cognition, Brain and Language (BCBL)",
	"Department of Psychology, Stanford University"
	],
	"name": "Lerma-Usabiaga, Garikoitz",
	"orcid": "0000-0001-9800-4816"
	},
	{
	"affiliation": "Department of Psychology, University of Texas at Austin, TX, USA",
	"name": "Pisner, Derek",
	"orcid": "0000-0002-1228-0201"
	},

(it is ordered alphabetically by lastname)

[oesteban]

Shoot, I've overwritten your changes - assumed I was changing history (and I shouldn't have).

Can you add the lines here as a comment? @slimnsour

[slimnsour]

No worries, here it is.

{
   "affiliation": "The Centre for Addiction and Mental Health",
   "name": "Mansour, Salim",
   "orcid": "0000-0002-1092-1650"
},

[oesteban]

Works locally. I'm going to merge. Thanks for this great work @slimnsour and sorry for my slow response all the time.