Merge pull request #13 from kashefy/large_arr #38
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: nosetests | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| matrix: | |
| python-version: [ 3.7, 3.8, 3.9 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| conda init bash | |
| - name: Install dependencies | |
| run: | | |
| conda create -q -n test-env python=${{ matrix.python-version }} pytables numpy scipy pandas tqdm | |
| source activate test-env | |
| # - name: Lint with flake8 | |
| # run: | | |
| # conda install flake8 | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Set my pythonpath | |
| run: | | |
| echo "PYTHONPATH=/home/runner/work/rsatools/rsatools" >> $GITHUB_ENV | |
| - name: show python path | |
| run: | | |
| python -c "import sys; print('\n'.join(sys.path))" | |
| - name: Unit Testing | |
| run: | | |
| source activate test-env | |
| python --version | |
| conda install -q nose coveralls | |
| nosetests --with-coverage | |
| - name: Coveralls | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| parallel: true | |
| flag-name: Unit Testing | |
| finish: | |
| needs: build | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Coveralls Finished | |
| uses: AndreMiras/coveralls-python-action@develop | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| parallel-finished: true |