Code

Updates to coords other minor bugs#64

Code

Merged

andrewjpage merged 7 commits intonickjcroucher:masternickjcroucher/gubbins:masterfrom andrewjpage:masterandrewjpage/gubbins:masterCopy head branch name to clipboardMar 8, 2013

+227-197

Commits

Commits on Feb 28, 2013

• vcf incorrectly offset

  andrewjpage

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  e6cefbe

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• correct coordinates which were 1 off

  andrewjpage

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  127e799

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• move window by half the window size each time

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  a6fa321

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Commits on Mar 1, 2013

• latest kseq from samtools

  andrewjpage

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  6844103

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Commits on Mar 7, 2013

• ignore case for n when propagaing gaps

  andrewjpage

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  d76231f

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• number of child indices is equal to the number of children not snps

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  09685cd

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• colour branch blocks differently

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  8e525ec

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