Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fixed biopython sub_features bug #186

Merged
merged 3 commits into from
Feb 20, 2017
Merged

Fixed biopython sub_features bug #186

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
cef2dcc
gubbins_drawer.py fixed biopython error
Feb 20, 2017
f0eb50f
Merge branch '516666'
Feb 20, 2017
6f3af4a
change version nr
Feb 20, 2017
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 4 additions & 0 deletions CHANGELOG
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,3 +1,7 @@
v2.2.1 - 20 Feb 2017
-----
Remove use of Biopythons sub_features function which has been deprecated.

v2.2.0 - 31 Oct 2016
------
By default dont filter out sequences which are 100% identical.
Expand Down
2 changes: 1 addition & 1 deletion VERSION
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1 +1 @@
2.2.0
2.2.1
5 changes: 3 additions & 2 deletions python/scripts/gubbins_drawer.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -201,8 +201,9 @@ def add_ordered_embl_to_diagram(record, incfeatures=["CDS", "feature"], emblfile

locations=[]

locations=iterate_subfeatures(feature, locations)


locations.append((feature.location.start, feature.location.end))

if "taxa" in feature.qualifiers:
qualifiernames=feature.qualifiers["taxa"][0].replace(", "," ").split()

Expand Down