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Fixed critical bugs for samples larger than n=300; Improved useability #8

Merged
merged 15 commits into from
Jan 20, 2015
Merged

Fixed critical bugs for samples larger than n=300; Improved useability #8

merged 15 commits into from
Jan 20, 2015

Commits on Jan 17, 2015

  1. Tims updates to 

    1) No longer allocated device memory for Phi (used for logistic regression) and for the residuals. This saves quite a bit of memory.
2) Increase the number of subjects allowed to 2000.  (I will change this so it is no longer constant later).
This has been tested with 956 subjects 15 covariates, requiring 1565 MB of device (GPU) memory (out of K20c's 4799 MB); 2000 subjects should be feasible.

Note max # covariates is 20.
Max # subjects now 2000—which should take up less than 3300MB of device Memory w/15 covariates.
    @nicholst
    nicholst committed Jan 17, 2015
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Commits on Jan 19, 2015

  1. Add check for missing seed.dat file

    @nicholst
    nicholst committed Jan 19, 2015
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  2. Added various edits to improve the user interface

    @nicholst
    nicholst committed Jan 19, 2015
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Commits on Jan 20, 2015

  1. fix bug in SAVE_ITER (must never be zero)

    Bernd Taschler committed Jan 20, 2015
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  2. synchronise with changes I made on goldfinch

    Bernd Taschler committed Jan 20, 2015
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  3. incorporate changes made to main.cu (more verbose error massages)

    Bernd Taschler committed Jan 20, 2015
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  4. Merge branch 'BigN' of git://github.com/bathybicBee/BSGLMM-1 into bat… 

    …hybicBee-BigN

Conflicts:
	bsglmm/main.cu
    @nicholst
    nicholst committed Jan 20, 2015
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  5. Getting rid of carriage returns (and maybe updating a fix for the low… 

    …-iter bug)
    @nicholst
    nicholst committed Jan 20, 2015
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  6. Merge branch 'bathybicBee-BigN' into BigN 

    ...Bernds edits into BigN
    @nicholst
    nicholst committed Jan 20, 2015
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  7. Added .gitattributes... hopefully to solve LF/CR nightmares

    @nicholst
    nicholst committed Jan 20, 2015
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  8. Edits to main to improve usability

    @nicholst
    nicholst committed Jan 20, 2015
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  9. More CRLF nightmares

    @nicholst
    nicholst committed Jan 20, 2015
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  10. Re-doing the fix for low iters (oddly, with code found in the master!)

    @nicholst
    nicholst committed Jan 20, 2015
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  11. Added a warning not to trust the CPU code

    @nicholst
    nicholst committed Jan 20, 2015
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  12. Missing semicolons!

    @nicholst
    nicholst committed Jan 20, 2015
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