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Merge pull request #3 from luizirber/patch-1
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Fix instruction for download
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mr-c committed Jan 17, 2014
2 parents a6667df + 27b3a1e commit 16cf41e
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions doc/tutorials-2013/bwa-tutorial.txt
Original file line number Diff line number Diff line change
Expand Up @@ -86,13 +86,13 @@ To actually do the mapping, we need to download and install bwa.

First we are going to grab the source files for bwa from sourceforge,
using curl. It is important to know that we need to specify a few
flags to let the program know that we want to keep the name (and
filetype) for the file (-O) and that curl should follow relative
hyperlinks (-L), to deal with redirection of the file site (or else
curl won't work with sourceforge).::
flags to let the program know that we want to save the output to a
file (-o) instead of the default (print it on the screen) and that
curl should follow relative hyperlinks (-L), to deal with redirection
of the file site (or else curl won't work with sourceforge).::

cd /mnt
wget -O bwa-0.7.5.tar.bz2 http://sourceforge.net/projects/bio-bwa/files/bwa-0.7.5a.tar.bz2/download
curl -L -o bwa-0.7.5.tar.bz2 http://sourceforge.net/projects/bio-bwa/files/bwa-0.7.5a.tar.bz2/download

Now we want to uncompress the tarball file using "tar". x extracts, v
is verbose (telling you what it is doing), f skips prompting for each
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