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latest from coda-oss and NITRO #631

Merged
merged 103 commits into from
Feb 17, 2023
Merged

latest from coda-oss and NITRO #631

merged 103 commits into from
Feb 17, 2023

Commits on Nov 18, 2022

  1. latest from coda-oss

    Dan Smith authored and Dan Smith committed Nov 18, 2022
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  2. Squashed 'externals/coda-oss/' changes from 67d6362bcf..d06dc6534d

    d06dc6534d mem::AutoPtr for C++17 (#615)
    83443602a6 mem::AutoPtr class to aid C++17 transition (#614)
    f10fa2009c Release 2022-11-04 (#613)
    a32e697044 remove exception specifications (#609)
    084f19126a utilities to find files/directories for unittests (#608)
    a3cedada96 Merge branch 'master'
    fde6c864fa Merge pull request #607 from mdaus/bugfix/change-order-of-config-header-install
    c8a0044010 Install the cmake-configured header after installing the xercesc source tree. Otherwise, the original config will persist in the install
    dda2c9acda Merge pull request #606 from mdaus/fix-xerces-config
    004a00f09b Bump zlib version for conan builds
    207f4dbb9f Fix Xerces config issue and install its config.h
    b842417671 Add support for debug optimizations.
    0f6cda57dc Use enhanced debug information with gcc/gdb.
    5047dce1a9 Work around GCC avx support bug.
    001ab18751 Rebuild the waf self-extractor with a fix for the FIPS error.
    5a7f64fca2 Revert "Rebuild the waf self-extractor with a fix for the FIPS problem."
    9f6f775f8f Rebuild the waf self-extractor with a fix for the FIPS problem.
    af7229bd83 utilities to find files from a build (#605)
    264ae49dd7 be sure downstream projects build w/C++14 (#604)
    7a7b13cbd5 "hello world" for HDF5 (#602)
    33cff0ff43 more C++14
    963e8ff40c Revert "add HDF5 source code (#603)"
    7b5e71a006 add HDF5 source code (#603)
    ec7bb2e520 add HDF5 source code (#603)
    ec26f703e7 build in NITRO and SIX (#601)
    f4361a9730 make it easier to write cli unit-tests (#600)
    34b6fdeee1 tweak toString() to reduce specialization (#599)
    5907b3ed60 remove C++11 workarounds (#598)
    caed59480d Release 2022-08-30_cpp14 (#597)
    2630d41e08 get rid of merge conflict
    652bce3854 Merge branch 'master'
    6f41c09d71 Release 2022-08-30 (#596)
    838c323d6a Merge branch 'master'
    f916680126 Added handler accessor to MinidomParser for inheriting modules (#594)
    72d29e9c27 get unittests working when "nested" in other projects (#595)
    f8f18fea5f Actually look at unit test results when using waf (#593)
    4189c429e8 Merge branch 'master'
    cda679ceee more overloads to take a string length (#592)
    b95a32bc4c by default, Uri()s aren't validated (#591)
    903ee7ffff Merge branch 'master'
    173930a6f2 fix a UTF-8 conversion bug (#590)
    a1c0a1eea6 Merge branch 'master'
    c5c221a832 CODA code inherits from xml.lite classes :-( (#589)
    1bfe5fc402 Merge branch 'master'
    a4c6294c30 use EncodedStringView instead of _bstr_t (#588)
    6c2df8bb62 "main" is now C++14 (not C++20)
    2ce4161080 Squashed commit of the following:
    3a0f7fd14d Merge branch 'master'
    83c982f0cf remove work-arounds to write non-UTF-8 XML (#586)
    142fd7185e Merge branch 'master'
    ebf6db1762 <bit> is part of C++20
    d3aa8aa5ce std::u8string is in C++20, not C++17
    03654933c4 changes to math.linear from coda (#587)
    d442e5be0f Merge branch 'master'
    5a2f8e52f1 release 2022-08-02 (#585)
    e5516aba29 tweak names to match utf8:: conventions (#584)
    32f08a9e40 Squashed commit of the following:
    ee15ba3172 Merge branch 'master'
    3083ec7915 move most platform-specific code to EncodedStringView (#583)
    bede753547 fix unit-test with C++20
    61a8033f62 consistent use of coda_oss:: and std::
    5d3bf9eb83 Merge branch 'master'
    36371410c0 EncodedString tweaks for XML processing (#582)
    cf2016205c remove any vestiges of Expat and libXML (#580)
    33538aa0fc update for newer Intel compiler
    ed65e4ccc5 Add two patch candidates to fix FIPS problems in waf.
    34c40bd397 Merge branch 'master'
    a731ebf8e8 release 2022-06-29 (#579)
    a9b9d2a9fa Merge branch 'master'
    59387bd87b update "ReleaseNotes.md" for recent changes (#578)
    24a3f01afe Merge branch 'master'
    e4f940854a remove "boost" and "serialize" (#577)
    80b70537e9 update to zlib-1.2.12 (#576)
    f92811a53b Merge branch 'master'
    202084bacb Remove some compiler warnings (#575)
    414c25c551 build with C++20 in VS
    1a99a29da3 Merge branch 'master'
    c61232224b build most code with Visual Studio (#574)
    5cca863d7e Merge branch 'master'
    6e4d952bea some unit-tests need argc/argv (#573)
    36e051d7b6 Add run1D method to GenerationThreadPool (#572)
    6d4776235e Merge branch 'master'
    0a08b8e4e9 build "coda-oss-lite" as a VS2022 project (#571)
    6677cc38e3 simplify creation of encodes string (#570)
    ba62c610c1 Add the 'universal_newlines=True' flag to python Popen calls.
    984e4a96ce Fix a bug in waf platform detection.
    8f1173f4a6 fix build errors
    f21af35b0b Merge branch 'master'
    d2aca8d4b5 release 2022-05-03 (#569)
    ff55fed596 can't replace all TEST_ASSERT macros with functions (#568)
    4db8ada411 restore changes clobbered with merge from "master"
    a1f36e1839 Merge branch 'master'
    89a636a6af fix copy/assignment in EncodedString (#567)
    c3fe91d424 latest tweaks to build with C++17 (#566)
    a59a51b571 be sure we use a 64-bit time_t (#565)
    1f79fb3ddf Poly2D::atY() bugfix (#564)
    ac5307662d Testing to see if windows-2019 works with github actions (#563)
    8d0726b37e Fix a bug in waf platform detection.
    80fe8e9f8a Merge branch 'master'
    c662b5aac3 Update ReleaseNotes.md
    ef4a3bbd9a Release 2022-02-22 (aka 2/22/22) (#562)
    33b0f3f6eb Merge branch 'master'
    8bd0c8cf4a Merge branch 'main' of github.com:mdaus/coda-oss
    0a0e6cf145 use char16_t on Linux (#560)
    7e41b4b5e4 Merge branch 'feature/use-cpp11-code'
    fe65bfddfb fix units for ICC, sys::filesystem (#559)
    fc99e4b3e6 recreate from "master"
    510317c07a use std::filesystem to "implement" sys::filesystem
    895f6c77cd always implement sys::filesystem
    0d83ae22fc "units" changes from master
    b58173b781 latest from "master" (not quite)
    793e3442c8 Squashed commit of the following:
    91a729f5a2 re-create from "master"
    def979170b update to GSL 4.0.0 (#558)
    fe365e5a41 fix XML validation for UTF-8 (#557)
    502e5829b8 support conversion to std::wstring (#556)
    e69422596a Delete codeql-analysis.yml
    45bc6a9640 Create codeql-analysis.yml
    87d9a7ef54 remove CodeQL
    eab5ecb899 Update build_unittest.yml
    8ab12d47e9 Delete codeql-analysis.yml
    9e542092b8 try running CodeQL as part of build-linux-cmake
    de0c50651e Create codeql-analysis.yml
    049608782b tweaks to build in "coda" (#554)
    0ba24233b9 replace sys::U8string with coda_oss::u8string (#553)
    bcee6551f2 add EncodedString class (#552)
    c2eecd3925 simplify implementation of EncodedStringView (#551)
    c1320ef00d fix 'typename' for other compilers (#550)
    ac3b93931f tweaks to make "main" build easier (#549)
    78da741cf5 remove sys/Optional.h (#548)
    f31730ac77 put our std work-arounds in one place (#547)
    9b7bb571a9 Add an EncodedStringView class (#545)
    c0e1da5201 another batch of tweaks to cleanup compiler warnings, etc. (#546)
    0f3bfd9d05 added missing "virtual", support unique_ptr (#544)
    ca32f99c03 Add option to specify curl installation location. (#501)
    2df9c1a819 allow std::filesystem::path to be used for validation (#543)
    2891435760 add SinCos for units::Angle (#542)
    e430eddefb Delete log4j as 1) it's old, 2) coda-oss doesn't use it, and 3) remove any questions about security vulnerability (#541)
    bb11134fd0 xml.lite tweaks (#540)
    955b33e215 Release 2021_12_13 (#539)
    d73d74d5c1 xml.lite tweaks (#537)
    3a90e25c6f use more C++11 functionality (#538)
    9ca2a0e50c remove more compiler warnings (#536)
    0ec9da1e91 be sure == and != are in-sync (#535)
    9084be32c4 fix size_t compiler warnings (#534)
    abd6469ec8 fix ICC errors (#533)
    09cb36fff4 update version number before cutting a new release (#532)
    c29e4d2988 fix ICC warnings/errors from high-side (#531)
    91f8f1c089 simplify our std:: implementations (#530)
    7c633c7bb5 Further reduce use of std::auto_ptr (#529)
    d85883749c Provide support for creating simple version numbers (#528)
    b035825929 Merge pull request #527 from mdaus/fix-crypt-h-clash
    ffed3d6339 Disable encryption support in minizip build and remove crypt.h header
    ee2b2bf8c0 Merge pull request #525 from mdaus/swig-fix
    3c02ff2893 Fix config-python prefix issue
    6149053d4e Add new config-python module for SWIG compatibility workarounds
    30acf5b9af mt::transform_async(), mem::SharedPtr, math::SinCos() (#526)
    21efd6a6c9 Implement better workaround for lack of SWIG support for "final"
    60837a62ea Revert unneeded changes
    0bc994dea7 Fix SWIG path issue for waf build
    070f4e9150 Update SWIG generated files
    f8472b0c46 Fix SWIG path issues and warnings
    e10707f758 Set minimum SWIG version to 4.0.1
    b8cdba5c75 Fix waf SWIG build issue
    2bd0ee39e5 Enable SWIG in Github waf build
    f2b001146f Try fixing SWIG compile issue again
    afafabcc28 Fix SWIG compile issue on Linux due to missing macro
    7c8d4a81d5 Add SWIG to the CI flow
    4023d721c5 Regenerate SWIG bindings
    1d8c70109c Add some compile definitions needed by SWIG for CMake build
    e5cc58545f Remove some functions which return unique_ptr from SWIG bindings (incompatible).
    965a2913dd Remove "final" specifier from structs bound in SWIG (incompatible)
    f1bec56014 Merge branch 'master' of https://github.com/mdaus/coda-oss
    c01c4d7de5 do in-line initialization (#524)
    fb7230ea1e Update CMakeLists.txt
    5dfb056898 tweaks for C++17 (#523)
    1a7d3ab522 Merge pull request #515 from mdaus/security-and-conan-updates
    d13885df66 make it easier to create a new Element with the right encoding (#522)
    3fb09e73ab Merge pull request #359 from mdaus/parseArgUpdate
    0d546a8f1b Tweak some ArgumentParser tests for the ignoreUnknownArguments option
    14bd1f26d4 Merge remote-tracking branch 'origin/master' into parseArgUpdate
    cf398c0d36 tweak code for C++11/C++17 (#521)
    2d0322b070 reduce use of std::auto_ptr (#520)
    853320e90f reduce use of deprecated C++98 code (#519)
    4752ba2221 Replace some warning pragmas with macros
    32685554ff Merge remote-tracking branch 'origin/master' into security-and-conan-updates
    f0350c0cfd Merge pull request #518 from mdaus/bugfix/python3.9-related
    fc01df0d8c fix typos in gcc macros
    9d356f36cd fix gcc impl
    8124da763f remove unreachable code
    d034b3a849 clobber warnings from numpy innards
    9941a401e1 macros to disable warnings around system headers
    8a725bb8f3 Merge pull request #516 from mdaus/mbraswell-enablecpp17-windows
    2e7b8165ae Fixed pragma stuff on gcc
    9775bb02d9 Fixed pragma stuff on gcc
    680d3cce41 Merge branch 'master' of https://github.com/mdaus/coda-oss
    8ffd6ed790 forgot to add "units" to CMakeFiles.txt
    06835676e5 Remove Auto_ptr flag and make disable warnings cross_platform compatible
    d62efece56 Merge branch 'master' of https://github.com/mdaus/coda-oss into mbraswell-enablecpp17-windows
    d04042ee9a Merge pull request #517 from mdaus/develop/compiler-warning-helpers
    cf5cd16b33 Fix macro usage on gcc
    a88bbcd202 Macros to narrowly target disabling warnings
    c0d5cdf004 Formatting Changes
    be019b44b2 Formatting Changes
    2eb04dc9e7 Fixed compiler warnings and added option to compile cpp17 with waf on windows
    5d9f27faeb Refactor coda-oss conan recipe
    ce66457149 Disable warning for MSVC2017 and earlier
    ecfefbfbec Merge remote-tracking branch 'origin/master' into security-and-conan-updates
    8b1479881d Merge pull request #514 from mdaus/develop/fix-unused-symbol-errors
    1d9a4ec712 Add conan option to use std::regex instead of pcre
    6dd5d44576 add required include
    4c0ae77811 add required include
    1873ceeb8a parameterize build (somewhat)
    c9ef567a7a fix Release compile error
    e6b47e94ee fix compiler error
    eff205ba2d helper macro to fix unusual targets
    342098a32c Fix CMake build for modules without include files
    5625706ebf Enable cpp17 option for windows builds
    98e12b138e Use consistent line endings for *.in template files
    d01fea0b73 Configure coda_add_module to install more file extension types
    30823f673b Delete stray file
    ac7760ba22 Load dependency targets when loading coda-oss for conan build
    14781cab8e Implement conan build for openjpeg and pcre2 dependencies
    9d955efa53 Exclude unsupported XML backend wrappers from CMake build to remove warnings
    1e8c9b2643 Merge remote-tracking branch 'origin/master' into security-and-conan-updates
    772d804951 Implement conan build for libjpeg dependency
    98b653dea4 Implement conan build for xerces-c dependency
    11323e8e98 Implement conan build for zlib dependency
    d0e6bf2c4b Improve conan test_package
    a03e1294e1 Fix uninitialized member variable warning in mt::AbstractTiedThreadPool
    c7bb47b5f8 Remove member variable duplicated in derived class io::ToggleOutputStream
    0838ac2ca2 Use consistent line endings for conan recipes and CMake files.
    2768e5f07e Update libjpeg to v9d
    d75f55bcac Update zlib to 1.2.11
    ca2f84cff3 Fix warning in GSL for MSVC 2015 and earlier
    1babd19b55 Fix warning in thread tests for MSVC
    2f17632496 Fix warning in except module for Visual Studio 2015 and earlier
    a485bf6bb1 Fix BIGENDIAN redefinition warning
    59543e42b2 Disable warning in dbi for MSVC 2017 and earlier
    b4b212834b Fix warnings in numpyutils for MSVC 2017 and earlier
    2b179b6587 Fix integer overflow issue
    898151ad75 Hook up simple "units" (#513)
    4d6beeecc5 Merge pull request #511 from mdaus/develop/horizontal-improved-numerical-precision
    c1878b228e Fix for numerical precision issues surrounding horizontal lines
    7d1442c66c Merge pull request #510 from mbraswell/fix-testnumelements-build
    58fc85f096 Whitespace change to trigger workflow
    ab74026b9f Fix wscript to successfully build test_num_elements
    323283cd78 Merge pull request #509 from mbraswell/develop-mbraswell-cpp17
    16a5502896 Added option to enable cpp17
    b0625cf5a2 tweak debug stuff (#508)
    8455494878 fix RowCol casting (#507)
    01fbb5f008 Get std::u8string working right with C++20 (#506)
    df9413efae more "noexcept" for fewer code-analysis diagnostics (#505)
    e6219f97f9 reduce compiler warnings/code-analysis diagnostics (#504)
    4c9ea0ef18 tweaks for VS2019 16.10 (#503)
    0d8ea070a5 reduce compiler warnings (#502)
    625b8b59d4 reduce compiler warnings (#500)
    3795758da0 get rid of more compiler warnings/code-analysis diagnostics (#499)
    427f91be85 reduce compiler-warnings and code-analysis diagnostics (#498)
    c82dd9e370 cleanup compiler and code-analysis diagnistics (#496)
    b5105b54ae reduce compiler warnings (#495)
    e0099cc269 Develop/compiler optimizations (#494)
    0eeb3f9638 tweaks to python wrappers made in "nitro" (#492)
    5f91f70604 fix printf() format string (#491)
    55b855a865 Delete codeql-analysis.yml
    603c192d3b Update codeql-analysis.yml
    f306979e87 Update codeql-analysis.yml
    4a1f78f8ef Create codeql-analysis.yml
    3c80a65680 add back coda_oss::filesystem::path (#490)
    eaea659ed3 tweak how std:: features are exposed (#489)
    0492f0d95f simplify code exposing std:: routines (#488)
    e5f3d77701 remove code-analysis diagnostics (#485)
    5be599e5af make HOME and USERPROFILE the same (#484)
    62b22ae019 cleanup more compiler warnings (#483)
    c32ec7dcc1 add unit-tests for env-var editing (#482)
    311aea4623 allow an environment-variable to be "edited" during expansion (#481)
    bbcab13103 static_assert is C++11, don't use it when checking for C++11 (#480)
    068562f589 fix glitches in expandEnviromentVariables() (#479)
    30ed1d95e2 produce a new Path::expandEnviromentVariables() function (#478)
    074a873b28 remove compiler warnings (#477)
    e29f65479f latest C++17 tweaks (#476)
    c4e681b0ae tweak code when wchar_t is a built-in type (#474)
    8449ac29a4 wchar_t might not be a built-in type on old systems (#473)
    a62bdb3e64 add operator= to sys::Optional (#472)
    8e310a776d use compiler-provided macros to determine features (#470)
    88405c8edb "constexpr" can be hard to get right with older compilers; don't even try (#471)
    b195ab3efc need at least VS2017 to use the real GSL (#469)
    2978f9114f tweaks to build with older compilers (#468)
    7235b898d3 The (old) version of SWIG we're using doesn't like certain C++11 features. (#464)
    cccde7f126 only look in the Win1252->UTF-8 map as a last resort (#467)
    3db09742c1 get rid of more compiler warnings (#465)
    5e0d2e8451 get rid of "char8_t" compiler warning (#463)
    d710bc6882 make getValue() easier to use (#462)
    f5a9284768 make getElement*() be consistent for both 0 and >1 (#461)
    88be6dba35 consistently add C++14/17/20 library features (#459)
    59c3a7e2ef use coda_oss:: as a drop-in replacement for std:: (#458)
    35de4524c4 use sys::Filesystem::path rather than std::string (#457)
    cace666005 make sys::Filesystem::path better conform to std::filesystem::path (#456)
    f395edc891 remove ambiguous overloads w/C++17 (#455)
    eac4371f19 use newly added sys::Optional<> to manage "encoding" (#454)
    243ef5e500 don't derive from std::iterator (#453)
    a48b011411 Arguments should be "const&" to prevent C4866 (#452)
    878bff901f provide std::span (#451)
    81727c4854 remove newly added a new pure virtual as that's a breaking change (#450)
    93cf0f03ef main -> master (#449)
    5af37a7363 be sure code compiles with C++17 (#448)
    82b5aecfb5 build with C++17 (#407)
    6ffb888d79 reduce compiler warnings (#439)
    9137dda7dc GSL (Guideline Support Library) from https://github.com/Microsoft/GSL (#423)
    bc5552cd20 update to xerces-c-3.2.3 (#409)
    6fe09e1dbb update to openjpeg-2.3.1 (#417)
    6405c0ce59 reduce differences in #407 (#438)
    2987bbf8d6 tweak how std::filesystem is enabled (#437)
    8fd3c2f202 tweak how std::endian is enabled (#436)
    138372c886 more straight-forward reduction of std::auto_ptr (#435)
    f13c7cec89 straight-forward reduction of std::auto_ptr (#434)
    d243b08e1b add mem::auto_ptr for transition to C++17 (#432)
    54ed52158e allow clients to specify custom toType and toString (#431)
    7f90aab25e remove trailing underscore from macro (#429)
    999e490686 with C++11, several sys typedefs are the same on both Windows & *nix (#427)
    6f075b1be5 add sys::Byte (#426)
    92221bd0d9 allow except::Throwable to derive from std::exception (#421)
    a8f52d0ad4 reduce compiler warnings (#424)
    63ea20af69 #including <bit> w/C++17 generates warnings (#408)
    10ef060313 reduce compiler warnings (#405)
    cf233fdcfd forgot Conf.cpp changes for sys::Endian (#403)
    cc53b18537 fix several compiler warnings/code-analysis diagnostics (#404)
    1db3751a3c implmeent sys::Endian from C++20 (#402)
    f042cd6bb9 support std::filesystem if desired (#400)
    4895a9f2dc WIN32 is old, but existing code might still use it; _WIN32 is better (#398)
    e2a62f8ec2 make it easier to use xml.lite (#396)
    1059b7da1c allow for explicit use of a UTF-8 string (#395)
    27de8b8a44 Optionally record how std::string is encoded when manipulating XML (#378)
    e0018cea75 implement some <filesystem>-like routines until we can use C++17 (#388)
    cafb2365b7 Merge pull request #363 from mdaus/feature/fix-compiler-warnings
    6a78bec201 use the existing sys::ubyte rather than making our own pre-C++17 std::byte
    14c9fc4ca4 fix a couple of G++ compiler warnings via static_cast<>
    e596a60070 std::numeric_limits<T>::epsilon() can be "constexpr"
    78b0f6bb26 another try at removing the compiler warning from tiff::split()
    8e1de21e17 fixed typo; added a few nots about why we're not using strncpy()
    fed3ba8cdb retore previous tiff::split() code as the change got rid of the compiler warning but wasn't portable
    98a589616d get rid of g++ strncpy() warning
    798f847117 don't use memset(0) with C++ objects
    7f697d078c casting result of system() to void doesn't get rid of compiler warning
    d55a849c51 remove new g++ compiler warnings in WSL
    d0aaa29884 Merge pull request #361 from mdaus/feature/fix-compiler-warnings
    cc62e866b0 fix compiler warnings
    d45c1f9a09 Updates based on peer review comments which include changing ostream to pointer, adding a couple of more tests, and updating all auto_ptr to unique_ptr in unit test.
    fb12ba1266 Update ArgumentParser to use a stream as an argument if the ignore unknown argument flag is set to true.
    536d2b0cad Added ability to ignore unknown arguments in the ArgumentParser.
    27288f49bb Merge pull request #358 from mdaus/conan-options
    fd5e1eecb7 Expose additional CMake options in conan recipe
    c972161793 Remove unneeded CMake function
    
    git-subtree-dir: externals/coda-oss
    git-subtree-split: d06dc6534d713ecce71db9986d8db3bb5f7a213f
    Dan Smith authored and Dan Smith committed Nov 18, 2022
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  3. Merge commit '587596209e6b83a36be0cdae208dbdf547347716' into develop/…

    …sync_externals
    Dan Smith authored and Dan Smith committed Nov 18, 2022
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  4. trying to get git subtree working

    Dan Smith authored and Dan Smith committed Nov 18, 2022
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  5. Merge commit 'bfe0023d6eb51bb0263af7b78d54594b24c720d5' as 'externals…

    …/nitro'
    Dan Smith authored and Dan Smith committed Nov 18, 2022
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  6. Squashed 'externals/nitro/' content from commit 29125a3472

    git-subtree-dir: externals/nitro
    git-subtree-split: 29125a3472688d0c60803c0d6ed922ac5248f69a
    Dan Smith authored and Dan Smith committed Nov 18, 2022
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  7. git subtree for nitro

    Dan Smith authored and Dan Smith committed Nov 18, 2022
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  8. pull from main, not master

    Dan Smith authored and Dan Smith committed Nov 18, 2022
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  9. Merge branch 'main' into develop/sync_externals

    Dan Smith authored and Dan Smith committed Nov 18, 2022
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Commits on Nov 25, 2022

  1. Merge commit '282e8cbe274ecdd2db4d82bf7da9004cca8003bc' into develop/…

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  2. Squashed 'externals/coda-oss/' changes from d06dc6534d..8241dfe7e6

    8241dfe7e6 remove last vestiges of std::auto_ptr (#616)
    
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  3. latest from nitro

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  4. add externals/nitro to fix merge conflicts

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  5. remove externals/nitro/externals

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  6. Squashed 'externals/nitro/' changes from 29125a3472..52fe000594

    52fe000594 latest from coda-oss (#514)
    1d29e4d865 remove std::auto_ptr (#513)
    
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  7. finish deleting externals/nitro/externals

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  8. finish deleting externals/nitro/externals

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  9. Merge branch 'main' into develop/sync_externals

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Commits on Nov 28, 2022

  1. Squashed 'externals/coda-oss/' changes from 8241dfe7e6..ab45464820

    ab45464820 remove C++17 workarounds (#618)
    3d5daf702e unittests for creating XML from scratch (#617)
    
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  2. Merge commit 'df96d9e5165b0ddebf1476edd6b720dc3570eaa3' into develop/…

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  3. add externals/nitro/externals for sync_externals

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  4. remove externals/nitro/externals

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  5. Squashed 'externals/nitro/' changes from 52fe000594..ffcce1e304

    ffcce1e304 latest from coda-oss (#515)
    
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  6. remove externals/nitro/externals

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Commits on Dec 5, 2022

  1. Merge branch 'main' into develop/sync_externals

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  2. latest from coda-oss and nitro

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  3. Merge commit 'b56123b5cad36f38b880a7f7906af939ce3efb09' into develop/…

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  4. Squashed 'externals/coda-oss/' changes from ab4546482..566597043

    566597043 Conan versioning, hdf5, and pcre2 fixes (#622)
    61aa5e430 Squashed commit of the following:
    6557ee34c Yet another attempt at finding test files for unittests (#621)
    501add035 -march=native for fastest optimization level (#620)
    f1dd0a5b4 overloads to make creating XML documents easier (#619)
    
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Commits on Dec 14, 2022

  1. Merge branch 'main' into develop/sync_externals

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  2. latest from coda-oss

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  3. NITRO-2.11.2

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  4. Squashed 'externals/coda-oss/' changes from 566597043..418130d4d

    418130d4d trying to fix build error on github
    59d2f678e Release 2022-12-14 (#628)
    1e8244291 new --with-optz=fastest-possible option (#627)
    6ae81142d new --optz=faster option for WAF builds (#626)
    11206c179 sym-links don't work on Windows filesystems
    edd3e8fb9 overloads to make simplify routine XML processing (#625)
    dfece6106 use sym-links rather than copying files (#624)
    22f1f0776 build hdf5.lite with WAF (#623)
    
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    git-subtree-split: 418130d4d1c02074963117ba112fd69cf477699d
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  5. Merge commit 'fb29352be984f5815d938f3d3d420065376b9d67' into develop/…

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  6. Squashed 'externals/nitro/' changes from 7306ac86a..46c6702f8

    46c6702f8 NITRO-2.11.2 (#521)
    cd053bd7f coda-oss 2022-12-14 (#520)
    28b65f4dc get unittests working in other projects (#518)
    9182384db latest from coda-oss (#517)
    ab88a99f5 Merge branch 'master'
    b39ccc4c0 Fix conan build issues (#516)
    abbf7e318 remove .git directory right away
    5be12fc35 merge develop/sync_externals
    103dd73ee latest from coda-oss (#508)
    f71128d6f Adding tarfile member sanitization to extractall() (#505)
    
    git-subtree-dir: externals/nitro
    git-subtree-split: 46c6702f869f30fe2dbb1fb85692f3e714d545f6
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  7. NITRO-2.11.2

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  8. NITRO-2.11.2

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Commits on Dec 20, 2022

  1. Merge branch 'main' into develop/sync_externals

    Dan Smith authored and Dan Smith committed Dec 20, 2022
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  2. latest from coda-oss

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  3. Squashed 'externals/coda-oss/' changes from c53304a90..1384b8a5e

    1384b8a5e Merge pull request #629 from mdaus/zlib-update
    ebbd57247 ZIP APIs use std::string in this branch
    9cc19fe82 ZIP unittests
    b8d25d364 Update zlib to 1.2.13
    
    git-subtree-dir: externals/coda-oss
    git-subtree-split: 1384b8a5e260c4a7418904508b1ab671950d8e45
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  4. Merge commit '1b453650287f842b73887accf3dcd5b5c0b3622c' into develop/…

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    Dan Smith authored and Dan Smith committed Dec 20, 2022
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  5. Squashed 'externals/nitro/' changes from 76047c7d3..bd741e4f1

    bd741e4f1 latest from coda-oss (#522)
    
    git-subtree-dir: externals/nitro
    git-subtree-split: bd741e4f1e850b290b04343e915ac8fba6637157
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  6. latest from coda-oss

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Commits on Dec 28, 2022

  1. Merge branch 'main' into develop/sync_externals

    Dan Smith authored and Dan Smith committed Dec 28, 2022
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  2. copy_externals

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  3. Squashed 'externals/coda-oss/' changes from 1384b8a5e..1582c6ac9

    1582c6ac9 further progress on implementing hdf5::lite (#631)
    0622af1fe rename "11" exception classes to "Ex" (#630)
    
    git-subtree-dir: externals/coda-oss
    git-subtree-split: 1582c6ac9e9f26ee4dbaa7018e6c98ab92ca88ec
    Dan Smith authored and Dan Smith committed Dec 28, 2022
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  4. Merge commit '9f17e182c95e843963342d26defcc665a261dd00' into develop/…

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  5. Squashed 'externals/nitro/' changes from bd741e4f1..a153ad562

    a153ad562 latest from coda-oss (#523)
    
    git-subtree-dir: externals/nitro
    git-subtree-split: a153ad562458b05be7b79fe56596c2d4b8eb9567
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  6. sync_externals

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  7. copy_externals

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Commits on Jan 3, 2023

  1. Merge branch 'main' into develop/sync_externals

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  4. Merge commit '4ac75b8305b61f67e9aad3a46a2f92f5e3600a5c' into develop/…

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    Dan Smith authored and Dan Smith committed Jan 3, 2023
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  5. Squashed 'externals/coda-oss/' changes from 1582c6ac9..986307c9c

    986307c9c Merge branch 'master'
    e1b0fa349 commit (but not build) HDF5 source code (#634)
    3fd5ddae5 Merge branch 'main' into develop/remove-cpp11-workarounds
    37d7ec76e restore C++14 workarounds for older compilers (#632)
    244dfdb3d Merge branch 'develop/main' into develop/remove-cpp11-workarounds
    714ca4ed7 restore C++14 workarounds for older compilers
    640f2247c Delete hdf5-hdf5-1_13_2.tar.gz
    eb365cbfb Merge branch 'master' into develop/remove-cpp11-workarounds
    57b938eeb don't need __INTEL_COMPILER work-around with C++14
    65779f3b1 build C code with -std=gnu99
    94dc9280f C++14 work-arounds for an old version of the Intel compiler
    3744d05e2 slam-in "main"
    82b2fd63b restore some C++14 work-arounds for old compilers that only have partial C++14 support
    94f6950a2 Merge branch 'main' into develop/remove-cpp11-workarounds
    1ac97fe48 add HDF5 source code (not built) (#612)
    8ab982820 Squashed commit of the following:
    31781a14a remove C++17 work-arounds
    c15f6930c Revert "<filesystem> is in C++17"
    0fe38c16f restore recent buld.py changes
    0c75411ee <filesystem> is in C++17
    bbbcd562a remove C++11 work-arounds
    c1e15e9d9 Merge branch 'main' into main-cpp17
    bea818fb0 must use C++17 in this branch
    91653a096 another place where C++17 is set
    7d555f2be back to C++17
    b1969d996 merge main
    0792c77bf Merge branch 'main' into develop/remove-cpp11-workarounds
    e49f273c1 Merge branch 'main' into develop/remove-cpp11-workarounds
    240b61044 allow sys::Mutex references, instead of pointers, to be passed to sys::ConditionVar
    9500d6f4b Merge branch 'main' into develop/remove-cpp11-workarounds
    f1529942f std::make_unique instead of new
    be9b6a71c Squashed commit of the following:
    62a2ec4e1 Revert "remove our GSL work-around for C++11"
    1db082c21 Revert "try the current "main" of GSL"
    44b70edde try the current "main" of GSL
    4edbf6bad Revert ""There is no warning 4814""
    bcd7458be "There is no warning 4814"
    c185bf3f1 starting working on MutexCpp11
    313bdd1d9 AtomicCounter* files have been removed
    c1c448051 remove our GSL work-around for C++11
    37ae1193e remove our mem::SharedPtr, it's now always std::shared_ptr
    71f3c1299 remove no-longer-used NSPR code
    8e77cb210 removed no-longer-used Irix and Solaris files
    fabef6966 use std::atomic for all AtomicCounter implementations
    ace5b6d5a TEST_FAIL -> TEST_FAIL_MSG
    30076c1d1 turns out there was already a TEST_FAIL macro
    d73ee16fb need "::" to find global test
    ba01c48df remove C++11 workarounds for C++14 features
    cbd4a31ae Squashed commit of the following:
    b21c203b8 Squashed commit of the following:
    5b542c60f Squashed commit of the following:
    cb0cf94ff ByteStream.cpp is now warning-free
    f5daa37fc cast to DWORD; "const" correctness
    bfaf644ff #pragma-away compiler warnings from standard headers
    72d202dbe Merge branch 'master' into develop/reduce-compiler-warnings
    b076580cd trying to fix GCC compiler warning
    1687dc7fc Merge branch 'master' into develop/reduce-compiler-warnings
    2c5db86db Merge branch 'master' into develop/reduce-compiler-warnings
    6f76c2e3e Update CMakeLists.txt
    c3ca4a538 do in-line initialization
    8e6733618 remove G++ compiler warning
    a0eff51cf Merge branch 'master' into develop/reduce-compiler-warnings
    af19d88a6 Merge branch 'master' into develop/reduce-compiler-warnings
    ba31cbaa9 use "void*" to avoid reinterpret_cast<>
    08da1f8a1 Merge branch 'master' into develop/reduce-compiler-warnings
    d1d453a2e Merge branch 'master' into develop/reduce-compiler-warnings
    f5074a996 CODA_OSS_NDEBUG is extra gunk and not used; omit for now.
    22de48858 don't even bother compiling our own versions of localtime_s() and gmtime_s() if we're not going to use them (compiler warning about "unused static funtion.")
    0c92eba58 tweak NDEBUG/CODA_OSS_NDEBUG; update comments
    544604775 Don't need to expose our own versions of localtime_s() and gmtime_s()
    a050796c1 Merge branch 'develop/reduce-compiler-warnings' of github.com:mdaus/coda-oss into develop/reduce-compiler-warnings
    fed604617 older compilers want std::string() as argument to std::logic_error()
    cf2c502a6 do more debug & release builds on GitHub
    d4aa99256 build some debug targets on Gitlab
    368245258 tweak CODA_OSS_DEBUG again for G++
    24ba64f71 tweak how CODA_OSS_DEBUG is set
    9680e8f0e add check for _GLIBCXX_DEBUG
    943218f83 Merge branch 'master' into develop/reduce-compiler-warnings
    01c68e705 %#@*@%)*%@ fix RowCol::cast() again! :-(
    b8472b457 oops ... gsl::narrow<> should be gsl::narrow_cast<> so that int/double conversion doesn't throw
    109255ca8 "final" breaks SWIG; wrap RowCol use of gsl::narrow
    e51e4c2ad no need to create local just to return
    e546f2510 Merge branch 'master' into develop/reduce-compiler-warnings
    d1391f989 use template for to_std_string() overloading
    566942680 fix std::char8_t when building with C++20
    cf604b1ab fix C++17 build errors
    48a0fbedb get rid of coda_oss namespace; use CODA_OSS_cpp17 instead
    9706a4336 remove code-analysis diagnostics
    50592e4f8 G++ complains about an unneeded call to std::move()
    9c7643c3f Merge branch 'master' into develop/reduce-compiler-warnings
    ecfe1f8a7 more "noexcept"
    b7ac50fb9 Merge branch 'master' into develop/reduce-compiler-warnings
    eaecf46ed tweak CODA_OSS_cplusplus from "main"
    5773b1ec1 trying to get C++17 WAF build working on Windows
    a048a00a1 unique names for waf & CMake
    7a5a0d5b2 do a better job of setting CODA_OSS_DEBUG
    4355aae92 Merge branch 'master' into develop/reduce-compiler-warnings
    1fd8cede2 cleanup for VS 2019 16.10
    4dffa1394 explicitly =delete copy/assignment
    df8f8920a Merge branch 'master' into develop/reduce-compiler-warnings
    42b4e99b6 remove code-analysis diagnostics
    70ce322c9 reduce compiler warnings/code-analysis diagnostics when building six
    20eac2f49 Merge branch 'master' into develop/reduce-compiler-warnings
    ff3ded56d get rid of more compiler warnings/code-analysis diagnostics
    669dd51ff Merge branch 'master' into develop/reduce-compiler-warnings
    623b65ab9 Merge branch 'master' into develop/reduce-compiler-warnings
    11c75df53 fix release build errors
    66f048b92 turn on more compiler warnings where possible
    eb615e315 consolidate calls to mem::make::unique
    a6f5eb690 reduce use of explicit new
    84d5e1b01 use mem::make::unique instead of explicit new
    019d726ea = default for default constructors
    86ab5d8f3 use std::unique_ptr and "const noexcept"
    b071972d7 another batch of =default for default constructors
    98276da94 more =default for default .ctor()s
    ceb7bc596 do default constructors with =default
    7bed51750 more code-analysis cleanup
    f9c04b117 "noexcept" code-analysis warnings
    6586ae390 need gsl::make_span from gsl/span_ext
    722089774 remove gsl/mem dependency cycle
    d741a0761 use gsl::narrow<> instead of static_cast
    99eb4b36e get rid of signed/unsigned mismatch compiler warning
    814450522 remove more code-analysis diagnostics
    c8441b309 Merge branch 'master' into develop/reduce-compiler-warnings
    e6d70a9ff last of "const" from code-analysis
    b8445814a mark a few more things as "const" per code-analysis
    d18544ec7 don't need to create temporary std::strings
    ee7faa979 still more code-analysis cleanup
    5cd6f864d cleanup more code-analysis diagnostics
    492fb0a86 one more compiler warning about implicitly deleted copy/assignment
    b8f782c88 remove compiler warnings about implicitly deleted copy/assignment/move
    14d1d1cb8 #pragma-away warnings from GSL
    86c40ea6c assert() to prevent some code-analysis diagnostics
    7204517a9 make copy/assignment explicit
    3ce824079 reduce code-analysis diagnostics
    01e367a56 Merge branch 'master' into develop/reduce-compiler-warnings
    03f3ddde9 proper printf format
    877d7dc93 Merge branch 'master' into develop/reduce-compiler-warnings
    5a4a3d575 code-analysis doesn't like C-style casts
    a3fdae416 code-analysis doesn't like NULL
    6309baedc Merge branch 'master' into develop/reduce-compiler-warnings
    d1194a2fe Merge branch 'master' into develop/reduce-compiler-warnings
    535b4757d Merge branch 'develop/reduce-compiler-warnings' of github.com:mdaus/coda-oss into develop/reduce-compiler-warnings
    a60b95d60 "constexpr" can be hard to get right with older C++11 compilers; don't even try
    c07b5303e Merge branch 'master' into develop/reduce-compiler-warnings
    04306bbee need at least VS2017 to use the real GSL
    796ad820b Merge branch 'master' into develop/reduce-compiler-warnings
    16c240cd6 Merge branch 'master' into develop/reduce-compiler-warnings
    e07e89f0c turn on "warnings as errors" for CMAKE builds
    5c019f891 complex "constexpr" functions not available with our version of g++
    4ab074a58 fix a few more compiler warnings ... nearing the end! :-)
    dea7ea41b And still more compiler warnings ... almost done 🤞🏻
    fbe3bbb20 remove assorted compiler warnings
    e60b7fd3c Merge branch 'master' into develop/reduce-compiler-warnings
    e9df212c6 Arguments should be "const&" to prevent C4866
    94e75cbed Merge branch 'master' into develop/reduce-compiler-warnings
    d3130414a Merge branch 'master' into develop/reduce-compiler-warnings
    9a5e71f31 Merge branch 'master' into develop/reduce-compiler-warnings
    bd27c0232 Merge branch 'master' into develop/reduce-compiler-warnings
    c053362d2 remove still more compiler warnings
    9f133b85a remove some more compiler warnings
    0883c729c Merge branch 'master' into develop/reduce-compiler-warnings
    f4b766880 avoid comparision between signed/unsigned to prevent compiler warning
    1e6564a6e eliminate more compiler warnings
    85a7b8ad0 remove a few compiler warnings
    09c82049f Merge branch 'master' into develop/reduce-compiler-warnings
    31f1662fa Merge branch 'master' into develop/reduce-compiler-warnings
    a313562a3 Merge branch 'feature/fix-compiler-warnings' into develop/reduce-compiler-warnings
    8547cdd24 eliminiate GCC warnings from Filesystem.h
    b5044b2a2 fix several compiler warnings/code-analysis diagnostics
    9d2f90b8c GetEnvironmentVariable() and getenv() aren't quite the same
    6faa3666f remove more compiler warnings
    
    git-subtree-dir: externals/coda-oss
    git-subtree-split: 986307c9c05f6b341e78245d220115fabe5b2fdb
    Dan Smith authored and Dan Smith committed Jan 3, 2023
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  6. Squashed 'externals/nitro/' changes from e1a64da1f..08cbb96f9

    08cbb96f9 build with older C++14 compilers (#524)
    
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  7. sync_externals

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  8. copy_externals

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Commits on Jan 10, 2023

  1. latest from coda-oss and nitro

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  3. Merge commit 'c6de395a760a35062eacbbb95469d74bd252d041' into develop/…

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    Dan Smith authored and Dan Smith committed Jan 10, 2023
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  4. Squashed 'externals/coda-oss/' changes from 986307c9c..b44709a95

    b44709a95 added ComplexSpansView utility (#635)
    
    git-subtree-dir: externals/coda-oss
    git-subtree-split: b44709a950f710ff790aae6f9f8eb9f6ec6b0df8
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  5. Squashed 'externals/nitro/' changes from 08cbb96f9..c71acc492

    c71acc492 latest from coda-oss (#526)
    
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  6. sync_externals

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Commits on Jan 23, 2023

  1. Merge branch 'main' into develop/sync_externals

    Dan Smith authored and Dan Smith committed Jan 23, 2023
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  2. --depth 1 for git-clone

    Dan Smith authored and Dan Smith committed Jan 23, 2023
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  3. latest from coda-oss

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  4. Squashed 'externals/coda-oss/' changes from b44709a95..b04ccca17

    b04ccca17 remove more C++11 work-arounds (#641)
    e460970a7 increase GCC warnings (#640)
    91284249b provide ComplexView iterator support (#639)
    453b7ec68 try to get std::make_unique working with old Intel compiler (#638)
    5736cfd4d is_trivially_copyable for old Intel compiler (#637)
    7c2aea38f use H5 SDK naming conventions (#636)
    fc3008b8d use 'modern' C pre-processor
    
    git-subtree-dir: externals/coda-oss
    git-subtree-split: b04ccca17493e538130c350208da59be42eb6bc7
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  5. Merge commit '037ad619eb109f776cbb5f3cc65fe379c43ab677' into develop/…

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    Dan Smith authored and Dan Smith committed Jan 23, 2023
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  6. Squashed 'externals/nitro/' changes from c71acc492..4ccdf5b37

    4ccdf5b37 latest from coda-oss (#527)
    
    git-subtree-dir: externals/nitro
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  7. latest from coda-oss

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  9. --depth 1 for git-clone

    Dan Smith authored and Dan Smith committed Jan 23, 2023
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Commits on Jan 25, 2023

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Commits on Feb 6, 2023

  1. Merge branch 'main' into develop/sync_externals

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  2. latest from coda-oss and NITRO

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  3. Merge commit '9c0aabd2a28741dc74c0bee309adcd3f774d6f7b' into develop/…

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    Dan Smith authored and Dan Smith committed Feb 6, 2023
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  4. Squashed 'externals/coda-oss/' changes from b04ccca17..9cfe9a4a8

    9cfe9a4a8 Merge branch 'master'
    e989b0910 createElement() needs to be virtual (#646)
    4bdaf10d9 Change xml lite function to virtual (#645)
    d17b57a54 Merge branch 'master'
    fa00a5430 move debug -g flags to be turned on only if debugging (#644)
    6be8f0a2e move debug -g flags to be turned on only if debugging (#644)
    44ab72854 routines for simple writing to HDF5 files (#643)
    aabc5818e remove more C++11 work-arounds (#642)
    
    git-subtree-dir: externals/coda-oss
    git-subtree-split: 9cfe9a4a8b92e982a5afce3938219dc3dc38bcc2
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  5. Squashed 'externals/nitro/' changes from 4ccdf5b37..24ff32863

    24ff32863 -j 6 seems to work for SIX, how about NITRO?
    713ee8538 -j 6 seems to work for SIX, how about NITRO?
    
    git-subtree-dir: externals/nitro
    git-subtree-split: 24ff328636e3acbf1745e49df45b787403ecb113
    Dan Smith authored and Dan Smith committed Feb 6, 2023
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  6. Merge commit '82a59a5fc5ecbfe92684e171002559df4d9abc99' into develop/…

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    Dan Smith authored and Dan Smith committed Feb 6, 2023
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  7. latest from coda-oss and NITRO

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  8. Merge commit '760b84d75f38a9dc70aa5cb05e6fc9e10a89be04' into develop/…

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    Dan Smith authored and Dan Smith committed Feb 6, 2023
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  9. Squashed 'externals/coda-oss/' changes from 9cfe9a4a8..b9ea37bbf

    b9ea37bbf xml::lite::Validator can be moved (#648)
    
    git-subtree-dir: externals/coda-oss
    git-subtree-split: b9ea37bbf3fce6f09a8e1b4bb2deb6abb57ca075
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  10. Squashed 'externals/nitro/' changes from 24ff32863..463c9e418

    463c9e418 latest from coda-oss (#531)
    
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    git-subtree-split: 463c9e4189a86679ff6d9d2d57cdafadcf9281ce
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Commits on Feb 8, 2023

  1. Merge branch 'main' into develop/sync_externals

    Dan Smith authored and Dan Smith committed Feb 8, 2023
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  3. Merge commit 'd46495ad7d1670f58099ad59e78de31b1c87611d' into develop/…

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    Dan Smith authored and Dan Smith committed Feb 8, 2023
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  4. Squashed 'externals/coda-oss/' changes from b9ea37bbf..81285872f

    81285872f build cleanly with all G++ warnings enabled (#649)
    
    git-subtree-dir: externals/coda-oss
    git-subtree-split: 81285872ff37b85594398a6752f7855ad84a2e92
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  5. Squashed 'externals/nitro/' changes from 463c9e418..b871d2b9c

    b871d2b9c latest from coda-oss (#532)
    e8ff6b444 apps: fix display of TREs from file extended header section (#529)
    
    git-subtree-dir: externals/nitro
    git-subtree-split: b871d2b9c76d02b9b56f8edb1fdbb5a67fe15d0f
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  8. fix DECLARE_EXCEPTION syntax

    Dan Smith authored and Dan Smith committed Feb 8, 2023
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Commits on Feb 17, 2023

  1. Merge branch 'main' into develop/sync_externals

    Dan Smith authored and Dan Smith committed Feb 17, 2023
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  3. Squashed 'externals/nitro/' changes from b871d2b9c..eea09a38d

    eea09a38d latest from coda-oss (#534)
    e2f038e45 adjust compiler flags for clean CMake builds (#533)
    
    git-subtree-dir: externals/nitro
    git-subtree-split: eea09a38d87765f6b65d598d1a541f4d8da1bff1
    Dan Smith authored and Dan Smith committed Feb 17, 2023
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  6. Squashed 'externals/coda-oss/' changes from 81285872f..ba8547621

    ba8547621 don't put 'struct' in the macro
    bd79aa11f require Python 3.7, do MD5 check
    ecfa687c5 use std::filesystem (instead of sys::filesystem) where possible (#652)
    243bc9991 add 'override'
    c0fd2124d wrap common "file open" routines to support sys::expandEnviromentVariables() (#651)
    0657f3297 adjust compiler flags for clean CMake builds (#650)
    
    git-subtree-dir: externals/coda-oss
    git-subtree-split: ba8547621a4fb41ff2b61b21dc46a3ad9a22293a
    Dan Smith authored and Dan Smith committed Feb 17, 2023
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  7. Merge commit '26a89ab35bc6bc49c70ec4ee95b784493ca80aeb' into develop/…

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    Dan Smith authored and Dan Smith committed Feb 17, 2023
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