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Squashed 'externals/coda-oss/' changes from 67d6362bc..6621823f7
6621823f7 fix warning about unknown #pragma 049e0a6d8 restore coda_oss::make_unique for C++11 032ce4fe7 tweak unittest for API changes 14db4196e std::auto_ptr -> std::unique_ptr changes from "main" b8af766fb XML.LITE changes from "main" 3f6d1c4f4 std::auto_ptr -> std::unique_ptr a73ffac26 CLI changes from "main" 8a95dfbd3 std::unique_ptr changes from "main" f0a706b66 "str" changes from "main" 05a9face4 "sys" changes from "main" b25dff2a4 add HDF5.LITE from "main" cb2ea1c1b ZIP unittests from "main" 9f8df22ff optz_fastest-possible from "main" 509e12eec misc. tweaks from "main" 59379fee4 updates to HDF5 and ZLIB from "main" 1ac97fe48 add HDF5 source code (not built) (#612) fde6c864f Merge pull request #607 from mdaus/bugfix/change-order-of-config-header-install c8a004401 Install the cmake-configured header after installing the xercesc source tree. Otherwise, the original config will persist in the install dda2c9acd Merge pull request #606 from mdaus/fix-xerces-config 004a00f09 Bump zlib version for conan builds 207f4dbb9 Fix Xerces config issue and install its config.h b84241767 Add support for debug optimizations. 0f6cda57d Use enhanced debug information with gcc/gdb. 5047dce1a Work around GCC avx support bug. 001ab1875 Rebuild the waf self-extractor with a fix for the FIPS error. 5a7f64fca Revert "Rebuild the waf self-extractor with a fix for the FIPS problem." 9f6f775f8 Rebuild the waf self-extractor with a fix for the FIPS problem. 963e8ff40 Revert "add HDF5 source code (#603)" ec7bb2e52 add HDF5 source code (#603) 6f41c09d7 Release 2022-08-30 (#596) f91668012 Added handler accessor to MinidomParser for inheriting modules (#594) 72d29e9c2 get unittests working when "nested" in other projects (#595) f8f18fea5 Actually look at unit test results when using waf (#593) cda679cee more overloads to take a string length (#592) b95a32bc4 by default, Uri()s aren't validated (#591) 173930a6f fix a UTF-8 conversion bug (#590) c5c221a83 CODA code inherits from xml.lite classes :-( (#589) a4c6294c3 use EncodedStringView instead of _bstr_t (#588) 83c982f0c remove work-arounds to write non-UTF-8 XML (#586) ebf6db176 <bit> is part of C++20 d3aa8aa5c std::u8string is in C++20, not C++17 03654933c changes to math.linear from coda (#587) 5a2f8e52f release 2022-08-02 (#585) e5516aba2 tweak names to match utf8:: conventions (#584) 3083ec791 move most platform-specific code to EncodedStringView (#583) 36371410c EncodedString tweaks for XML processing (#582) cf2016205 remove any vestiges of Expat and libXML (#580) 33538aa0f update for newer Intel compiler ed65e4ccc Add two patch candidates to fix FIPS problems in waf. a731ebf8e release 2022-06-29 (#579) 59387bd87 update "ReleaseNotes.md" for recent changes (#578) e4f940854 remove "boost" and "serialize" (#577) 80b70537e update to zlib-1.2.12 (#576) 202084bac Remove some compiler warnings (#575) c61232224 build most code with Visual Studio (#574) 6e4d952be some unit-tests need argc/argv (#573) 36e051d7b Add run1D method to GenerationThreadPool (#572) 0a08b8e4e build "coda-oss-lite" as a VS2022 project (#571) 6677cc38e simplify creation of encodes string (#570) ba62c610c Add the 'universal_newlines=True' flag to python Popen calls. 984e4a96c Fix a bug in waf platform detection. d2aca8d4b release 2022-05-03 (#569) ff55fed59 can't replace all TEST_ASSERT macros with functions (#568) 89a636a6a fix copy/assignment in EncodedString (#567) c3fe91d42 latest tweaks to build with C++17 (#566) a59a51b57 be sure we use a 64-bit time_t (#565) 1f79fb3dd Poly2D::atY() bugfix (#564) ac5307662 Testing to see if windows-2019 works with github actions (#563) 8d0726b37 Fix a bug in waf platform detection. c662b5aac Update ReleaseNotes.md ef4a3bbd9 Release 2022-02-22 (aka 2/22/22) (#562) 0a0e6cf14 use char16_t on Linux (#560) fe65bfddf fix units for ICC, sys::filesystem (#559) def979170 update to GSL 4.0.0 (#558) fe365e5a4 fix XML validation for UTF-8 (#557) 502e5829b support conversion to std::wstring (#556) e69422596 Delete codeql-analysis.yml 45bc6a964 Create codeql-analysis.yml 87d9a7ef5 remove CodeQL eab5ecb89 Update build_unittest.yml 8ab12d47e Delete codeql-analysis.yml 9e542092b try running CodeQL as part of build-linux-cmake de0c50651 Create codeql-analysis.yml 049608782 tweaks to build in "coda" (#554) 0ba24233b replace sys::U8string with coda_oss::u8string (#553) bcee6551f add EncodedString class (#552) c2eecd392 simplify implementation of EncodedStringView (#551) c1320ef00 fix 'typename' for other compilers (#550) ac3b93931 tweaks to make "main" build easier (#549) 78da741cf remove sys/Optional.h (#548) f31730ac7 put our std work-arounds in one place (#547) 9b7bb571a Add an EncodedStringView class (#545) c0e1da520 another batch of tweaks to cleanup compiler warnings, etc. (#546) 0f3bfd9d0 added missing "virtual", support unique_ptr (#544) ca32f99c0 Add option to specify curl installation location. (#501) 2df9c1a81 allow std::filesystem::path to be used for validation (#543) 289143576 add SinCos for units::Angle (#542) e430eddef Delete log4j as 1) it's old, 2) coda-oss doesn't use it, and 3) remove any questions about security vulnerability (#541) bb11134fd xml.lite tweaks (#540) 955b33e21 Release 2021_12_13 (#539) d73d74d5c xml.lite tweaks (#537) 3a90e25c6 use more C++11 functionality (#538) 9ca2a0e50 remove more compiler warnings (#536) 0ec9da1e9 be sure == and != are in-sync (#535) 9084be32c fix size_t compiler warnings (#534) abd6469ec fix ICC errors (#533) 09cb36fff update version number before cutting a new release (#532) c29e4d298 fix ICC warnings/errors from high-side (#531) 91f8f1c08 simplify our std:: implementations (#530) 7c633c7bb Further reduce use of std::auto_ptr (#529) d85883749 Provide support for creating simple version numbers (#528) b03582592 Merge pull request #527 from mdaus/fix-crypt-h-clash ffed3d633 Disable encryption support in minizip build and remove crypt.h header ee2b2bf8c Merge pull request #525 from mdaus/swig-fix 3c02ff289 Fix config-python prefix issue 6149053d4 Add new config-python module for SWIG compatibility workarounds 30acf5b9a mt::transform_async(), mem::SharedPtr, math::SinCos() (#526) 21efd6a6c Implement better workaround for lack of SWIG support for "final" 60837a62e Revert unneeded changes 0bc994dea Fix SWIG path issue for waf build 070f4e915 Update SWIG generated files f8472b0c4 Fix SWIG path issues and warnings e10707f75 Set minimum SWIG version to 4.0.1 b8cdba5c7 Fix waf SWIG build issue 2bd0ee39e Enable SWIG in Github waf build f2b001146 Try fixing SWIG compile issue again afafabcc2 Fix SWIG compile issue on Linux due to missing macro 7c8d4a81d Add SWIG to the CI flow 4023d721c Regenerate SWIG bindings 1d8c70109 Add some compile definitions needed by SWIG for CMake build e5cc58545 Remove some functions which return unique_ptr from SWIG bindings (incompatible). 965a2913d Remove "final" specifier from structs bound in SWIG (incompatible) f1bec5601 Merge branch 'master' of https://github.com/mdaus/coda-oss c01c4d7de do in-line initialization (#524) fb7230ea1 Update CMakeLists.txt 5dfb05689 tweaks for C++17 (#523) 1a7d3ab52 Merge pull request #515 from mdaus/security-and-conan-updates d13885df6 make it easier to create a new Element with the right encoding (#522) 3fb09e73a Merge pull request #359 from mdaus/parseArgUpdate 0d546a8f1 Tweak some ArgumentParser tests for the ignoreUnknownArguments option 14bd1f26d Merge remote-tracking branch 'origin/master' into parseArgUpdate cf398c0d3 tweak code for C++11/C++17 (#521) 2d0322b07 reduce use of std::auto_ptr (#520) 853320e90 reduce use of deprecated C++98 code (#519) 4752ba222 Replace some warning pragmas with macros 32685554f Merge remote-tracking branch 'origin/master' into security-and-conan-updates f0350c0cf Merge pull request #518 from mdaus/bugfix/python3.9-related fc01df0d8 fix typos in gcc macros 9d356f36c fix gcc impl 8124da763 remove unreachable code d034b3a84 clobber warnings from numpy innards 9941a401e macros to disable warnings around system headers 8a725bb8f Merge pull request #516 from mdaus/mbraswell-enablecpp17-windows 2e7b8165a Fixed pragma stuff on gcc 9775bb02d Fixed pragma stuff on gcc 680d3cce4 Merge branch 'master' of https://github.com/mdaus/coda-oss 8ffd6ed79 forgot to add "units" to CMakeFiles.txt 06835676e Remove Auto_ptr flag and make disable warnings cross_platform compatible d62efece5 Merge branch 'master' of https://github.com/mdaus/coda-oss into mbraswell-enablecpp17-windows d04042ee9 Merge pull request #517 from mdaus/develop/compiler-warning-helpers cf5cd16b3 Fix macro usage on gcc a88bbcd20 Macros to narrowly target disabling warnings c0d5cdf00 Formatting Changes be019b44b Formatting Changes 2eb04dc9e Fixed compiler warnings and added option to compile cpp17 with waf on windows 5d9f27fae Refactor coda-oss conan recipe ce6645714 Disable warning for MSVC2017 and earlier ecfefbfbe Merge remote-tracking branch 'origin/master' into security-and-conan-updates 8b1479881 Merge pull request #514 from mdaus/develop/fix-unused-symbol-errors 1d9a4ec71 Add conan option to use std::regex instead of pcre 6dd5d4457 add required include 4c0ae7781 add required include 1873ceeb8 parameterize build (somewhat) c9ef567a7 fix Release compile error e6b47e94e fix compiler error eff205ba2 helper macro to fix unusual targets 342098a32 Fix CMake build for modules without include files 5625706eb Enable cpp17 option for windows builds 98e12b138 Use consistent line endings for *.in template files d01fea0b7 Configure coda_add_module to install more file extension types 30823f673 Delete stray file ac7760ba2 Load dependency targets when loading coda-oss for conan build 14781cab8 Implement conan build for openjpeg and pcre2 dependencies 9d955efa5 Exclude unsupported XML backend wrappers from CMake build to remove warnings 1e8c9b264 Merge remote-tracking branch 'origin/master' into security-and-conan-updates 772d80495 Implement conan build for libjpeg dependency 98b653dea Implement conan build for xerces-c dependency 11323e8e9 Implement conan build for zlib dependency d0e6bf2c4 Improve conan test_package a03e1294e Fix uninitialized member variable warning in mt::AbstractTiedThreadPool c7bb47b5f Remove member variable duplicated in derived class io::ToggleOutputStream 0838ac2ca Use consistent line endings for conan recipes and CMake files. 2768e5f07 Update libjpeg to v9d d75f55bca Update zlib to 1.2.11 ca2f84cff Fix warning in GSL for MSVC 2015 and earlier 1babd19b5 Fix warning in thread tests for MSVC 2f1763249 Fix warning in except module for Visual Studio 2015 and earlier a485bf6bb Fix BIGENDIAN redefinition warning 59543e42b Disable warning in dbi for MSVC 2017 and earlier b4b212834 Fix warnings in numpyutils for MSVC 2017 and earlier 2b179b658 Fix integer overflow issue 898151ad7 Hook up simple "units" (#513) 4d6beeecc Merge pull request #511 from mdaus/develop/horizontal-improved-numerical-precision c1878b228 Fix for numerical precision issues surrounding horizontal lines 7d1442c66 Merge pull request #510 from mbraswell/fix-testnumelements-build 58fc85f09 Whitespace change to trigger workflow ab74026b9 Fix wscript to successfully build test_num_elements 323283cd7 Merge pull request #509 from mbraswell/develop-mbraswell-cpp17 16a550289 Added option to enable cpp17 b0625cf5a tweak debug stuff (#508) 845549487 fix RowCol casting (#507) 01fbb5f00 Get std::u8string working right with C++20 (#506) df9413efa more "noexcept" for fewer code-analysis diagnostics (#505) e6219f97f reduce compiler warnings/code-analysis diagnostics (#504) 4c9ea0ef1 tweaks for VS2019 16.10 (#503) 0d8ea070a reduce compiler warnings (#502) 625b8b59d reduce compiler warnings (#500) 3795758da get rid of more compiler warnings/code-analysis diagnostics (#499) 427f91be8 reduce compiler-warnings and code-analysis diagnostics (#498) c82dd9e37 cleanup compiler and code-analysis diagnistics (#496) b5105b54a reduce compiler warnings (#495) e0099cc26 Develop/compiler optimizations (#494) 0eeb3f963 tweaks to python wrappers made in "nitro" (#492) 5f91f7060 fix printf() format string (#491) 55b855a86 Delete codeql-analysis.yml 603c192d3 Update codeql-analysis.yml f306979e8 Update codeql-analysis.yml 4a1f78f8e Create codeql-analysis.yml 3c80a6568 add back coda_oss::filesystem::path (#490) eaea659ed tweak how std:: features are exposed (#489) 0492f0d95 simplify code exposing std:: routines (#488) e5f3d7770 remove code-analysis diagnostics (#485) 5be599e5a make HOME and USERPROFILE the same (#484) 62b22ae01 cleanup more compiler warnings (#483) c32ec7dcc add unit-tests for env-var editing (#482) 311aea462 allow an environment-variable to be "edited" during expansion (#481) bbcab1310 static_assert is C++11, don't use it when checking for C++11 (#480) 068562f58 fix glitches in expandEnviromentVariables() (#479) 30ed1d95e produce a new Path::expandEnviromentVariables() function (#478) 074a873b2 remove compiler warnings (#477) e29f65479 latest C++17 tweaks (#476) c4e681b0a tweak code when wchar_t is a built-in type (#474) 8449ac29a wchar_t might not be a built-in type on old systems (#473) a62bdb3e6 add operator= to sys::Optional (#472) 8e310a776 use compiler-provided macros to determine features (#470) 88405c8ed "constexpr" can be hard to get right with older compilers; don't even try (#471) b195ab3ef need at least VS2017 to use the real GSL (#469) 2978f9114 tweaks to build with older compilers (#468) 7235b898d The (old) version of SWIG we're using doesn't like certain C++11 features. (#464) cccde7f12 only look in the Win1252->UTF-8 map as a last resort (#467) 3db09742c get rid of more compiler warnings (#465) 5e0d2e845 get rid of "char8_t" compiler warning (#463) d710bc688 make getValue() easier to use (#462) f5a928476 make getElement*() be consistent for both 0 and >1 (#461) 88be6dba3 consistently add C++14/17/20 library features (#459) 59c3a7e2e use coda_oss:: as a drop-in replacement for std:: (#458) 35de4524c use sys::Filesystem::path rather than std::string (#457) cace66600 make sys::Filesystem::path better conform to std::filesystem::path (#456) f395edc89 remove ambiguous overloads w/C++17 (#455) eac4371f1 use newly added sys::Optional<> to manage "encoding" (#454) 243ef5e50 don't derive from std::iterator (#453) a48b01141 Arguments should be "const&" to prevent C4866 (#452) 878bff901 provide std::span (#451) 81727c485 remove newly added a new pure virtual as that's a breaking change (#450) 93cf0f03e main -> master (#449) 5af37a736 be sure code compiles with C++17 (#448) 82b5aecfb build with C++17 (#407) 6ffb888d7 reduce compiler warnings (#439) 9137dda7d GSL (Guideline Support Library) from https://github.com/Microsoft/GSL (#423) bc5552cd2 update to xerces-c-3.2.3 (#409) 6fe09e1db update to openjpeg-2.3.1 (#417) 6405c0ce5 reduce differences in #407 (#438) 2987bbf8d tweak how std::filesystem is enabled (#437) 8fd3c2f20 tweak how std::endian is enabled (#436) 138372c88 more straight-forward reduction of std::auto_ptr (#435) f13c7cec8 straight-forward reduction of std::auto_ptr (#434) d243b08e1 add mem::auto_ptr for transition to C++17 (#432) 54ed52158 allow clients to specify custom toType and toString (#431) 7f90aab25 remove trailing underscore from macro (#429) 999e49068 with C++11, several sys typedefs are the same on both Windows & *nix (#427) 6f075b1be add sys::Byte (#426) 92221bd0d allow except::Throwable to derive from std::exception (#421) a8f52d0ad reduce compiler warnings (#424) 63ea20af6 #including <bit> w/C++17 generates warnings (#408) 10ef06031 reduce compiler warnings (#405) cf233fdcf forgot Conf.cpp changes for sys::Endian (#403) cc53b1853 fix several compiler warnings/code-analysis diagnostics (#404) 1db3751a3 implmeent sys::Endian from C++20 (#402) f042cd6bb support std::filesystem if desired (#400) 4895a9f2d WIN32 is old, but existing code might still use it; _WIN32 is better (#398) e2a62f8ec make it easier to use xml.lite (#396) 1059b7da1 allow for explicit use of a UTF-8 string (#395) 27de8b8a4 Optionally record how std::string is encoded when manipulating XML (#378) e0018cea7 implement some <filesystem>-like routines until we can use C++17 (#388) cafb2365b Merge pull request #363 from mdaus/feature/fix-compiler-warnings 6a78bec20 use the existing sys::ubyte rather than making our own pre-C++17 std::byte 14c9fc4ca fix a couple of G++ compiler warnings via static_cast<> e596a6007 std::numeric_limits<T>::epsilon() can be "constexpr" 78b0f6bb2 another try at removing the compiler warning from tiff::split() 8e1de21e1 fixed typo; added a few nots about why we're not using strncpy() fed3ba8cd retore previous tiff::split() code as the change got rid of the compiler warning but wasn't portable 98a589616 get rid of g++ strncpy() warning 798f84711 don't use memset(0) with C++ objects 7f697d078 casting result of system() to void doesn't get rid of compiler warning d55a849c5 remove new g++ compiler warnings in WSL d0aaa2988 Merge pull request #361 from mdaus/feature/fix-compiler-warnings cc62e866b fix compiler warnings d45c1f9a0 Updates based on peer review comments which include changing ostream to pointer, adding a couple of more tests, and updating all auto_ptr to unique_ptr in unit test. fb12ba126 Update ArgumentParser to use a stream as an argument if the ignore unknown argument flag is set to true. 536d2b0ca Added ability to ignore unknown arguments in the ArgumentParser. 27288f49b Merge pull request #358 from mdaus/conan-options fd5e1eecb Expose additional CMake options in conan recipe c97216179 Remove unneeded CMake function git-subtree-dir: externals/coda-oss git-subtree-split: 6621823f7c968cc2396bb82e33a66eb9c0804427
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