Allow link for genome ref

nf-osi · Oct 12, 2023 · ab5500b · ab5500b
1 parent e00638e
commit ab5500b
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Showing 2 changed files with 7 additions and 3 deletions.
diff --git a/modules/Template/Data.yaml b/modules/Template/Data.yaml
@@ -74,7 +74,7 @@ classes:
 
   BulkSequencingAssayTemplate:
     is_a: GeneticsAssayTemplate
-    description: General template for raw RNA/DNA data, i.e. sequence data from a sequencing assay.
+    description: General template for raw (level 1) RNA/DNA data, i.e. sequence data from a sequencing assay.
     slots:
     - tissue
     - runType
@@ -289,10 +289,11 @@ classes:
   ProcessedAlignedReadsTemplate:
     is_a: BiologicalAssayDataTemplate
     description: >
-      Template for describing aligned reads output data (i.e. BAM files).
-      The QC meta are extracted from samtools stats when available and are aligned with GDC. 
+      Template for describing aligned reads (e.g. BAM/CRAM files) from a sequencing assay.
+      The QC meta are extracted from samtools stats when available and are the same metrics preferred by GDC. 
     slots:
     - genomicReference
+    - genomicReferenceLink
     - averageInsertSize
     - averageReadLength
     - averageBaseQuality

diff --git a/modules/props.yaml b/modules/props.yaml
@@ -291,6 +291,9 @@ slots:
     description: Version of genome reference used for alignment in processing workflow
     notes:
       - Currently used with nextflow-processed data.
+    required: true
+  genomicReferenceLink:
+    description: Link to genome reference data file used for alignment in processing workflow
     required: false
   id:
     description: The entity id for the resource automatically assigned by the platform.