Update Assay.yaml (#536)

* Update Assay.yaml * Rebuild NF.jsonld, json --------- Co-authored-by: nf-osi[bot] <[email protected]>
nf-osi · Oct 28, 2024 · 96c5e76 · 96c5e76
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diff --git a/NF.jsonld b/NF.jsonld
@@ -27773,6 +27773,9 @@
                 {
                     "@id": "bts:Proximityextensionassay"
                 },
+                {
+                    "@id": "bts:Puretoneaverage"
+                },
                 {
                     "@id": "bts:QuantitativePCR"
                 },
@@ -27863,6 +27866,9 @@
                 {
                     "@id": "bts:Whole-cellpatchclamp"
                 },
+                {
+                    "@id": "bts:Wordrecognitionscore"
+                },
                 {
                     "@id": "bts:STRprofile"
                 }
@@ -30851,6 +30857,26 @@
             "sms:required": "sms:false",
             "sms:validationRules": []
         },
+        {
+            "@id": "bts:Puretoneaverage",
+            "@type": "rdfs:Class",
+            "rdfs:comment": "TBD",
+            "rdfs:label": "Puretoneaverage",
+            "rdfs:subClassOf": [
+                {
+                    "@id": "bts:ProtocolAssay"
+                },
+                {
+                    "@id": "bts:Assay"
+                }
+            ],
+            "schema:isPartOf": {
+                "@id": "http://schema.biothings.io"
+            },
+            "sms:displayName": "pure tone average",
+            "sms:required": "sms:false",
+            "sms:validationRules": []
+        },
         {
             "@id": "bts:QuantitativePCR",
             "@type": "rdfs:Class",
@@ -31434,6 +31460,26 @@
             "sms:required": "sms:false",
             "sms:validationRules": []
         },
+        {
+            "@id": "bts:Wordrecognitionscore",
+            "@type": "rdfs:Class",
+            "rdfs:comment": "TBD",
+            "rdfs:label": "Wordrecognitionscore",
+            "rdfs:subClassOf": [
+                {
+                    "@id": "bts:ProtocolAssay"
+                },
+                {
+                    "@id": "bts:Assay"
+                }
+            ],
+            "schema:isPartOf": {
+                "@id": "http://schema.biothings.io"
+            },
+            "sms:displayName": "word recognition score",
+            "sms:required": "sms:false",
+            "sms:validationRules": []
+        },
         {
             "@id": "bts:STRprofile",
             "@type": "rdfs:Class",
@@ -31961,6 +32007,9 @@
                 {
                     "@id": "bts:Proximityextensionassay"
                 },
+                {
+                    "@id": "bts:Puretoneaverage"
+                },
                 {
                     "@id": "bts:QuantitativePCR"
                 },
@@ -32051,6 +32100,9 @@
                 {
                     "@id": "bts:Whole-cellpatchclamp"
                 },
+                {
+                    "@id": "bts:Wordrecognitionscore"
+                },
                 {
                     "@id": "bts:STRprofile"
                 }

diff --git a/modules/Assay/Assay.yaml b/modules/Assay/Assay.yaml
@@ -503,6 +503,8 @@ enums:
       proximity extension assay:
         description: Olink's Proximity Extension Assay (PEA) combines specificity and scalability to enable high-throughput, multiplex protein biomarker analysis. 
         source: https://olink.com/technology/what-is-pea
+      pure tone average:
+        description: Metric used to summarize hearing sensitivity at specific frequencies to assess hearing impairment. As PTA increases, hearing ability decreases.
       quantitative PCR:
         description: Quantitative PCR (Q-PCR) is used to measure the quantity of a PCR product (commonly in real-time). It quantitatively measures starting amounts of DNA, cDNA, or RNA.
         meaning: http://purl.obolibrary.org/obo/MI_1195
@@ -597,6 +599,8 @@ enums:
       whole-cell patch clamp:
         description: A patch-clamp assay where the electrode is left in place on the cell, as in cell-attached recordings, but the membrane patch has been perforated, providing access from the interior of the pipette to the intracellular space of the cell. Measurements made with this technique involve recording currents through multiple channels simultaneously, over the membrane of the entire cell.
         meaning: http://purl.obolibrary.org/obo/OBI_0002178
+      word recognition score:
+        description: Assays how well a person can understand speech by repeating a list of words. The WRS is a percentage of words correctly repeated. It's a more functional measure because it predicts whether hearing loss can be improved with amplification.
       STR profile:
         description: The analysis of all of the short tandem repeats in the genome of a biological sample.
         meaning: http://purl.obolibrary.org/obo/NCIT_C129889

diff --git a/registered-json-schemas/PortalDataset.json b/registered-json-schemas/PortalDataset.json
@@ -170,6 +170,7 @@
           "positron emission tomography",
           "PROMIS Cognitive Function",
           "proximity extension assay",
+          "pure tone average",
           "quantitative PCR",
           "questionnaire",
           "reactive oxygen species assay",
@@ -200,6 +201,7 @@
           "whole exome sequencing",
           "whole genome sequencing",
           "whole-cell patch clamp",
+          "word recognition score",
           "STR profile"
         ],
         "title": "assay",

diff --git a/registered-json-schemas/Superdataset.json b/registered-json-schemas/Superdataset.json
@@ -170,6 +170,7 @@
           "positron emission tomography",
           "PROMIS Cognitive Function",
           "proximity extension assay",
+          "pure tone average",
           "quantitative PCR",
           "questionnaire",
           "reactive oxygen species assay",
@@ -200,6 +201,7 @@
           "whole exome sequencing",
           "whole genome sequencing",
           "whole-cell patch clamp",
+          "word recognition score",
           "STR profile"
         ],
         "title": "assay",