Merging 3.1.0 and 3.1.1 template updates #1364
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ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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Set up job
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Check out pipeline code
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Set up Nextflow
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Set up Apptainer
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Set up Singularity
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Set up Miniconda
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Set up Conda
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Clean up Disk space
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Download GTF for additional annotation
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Download prebuild bowtie2 index
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Run pipeline with test data 24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker
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Post Set up Nextflow
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Post Check out pipeline code
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Complete job
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