Merging 3.1.0 and 3.1.1 template updates #1363
Triggered via pull request
December 30, 2024 22:58
heuermh
Status
Cancelled
Total duration
2m 46s
Artifacts
–
ci.yml
on: pull_request
Matrix: test
Matrix: test_nanopore
Matrix: test_parameters
Matrix: test_sispa
Annotations
138 errors and 20 warnings
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Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | docker)
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Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | singularity)
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Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
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Test parameters (latest-everything | --skip_plasmidid false --skip_asciigenome | conda)
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Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | singularity)
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Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | singularity)
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Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
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Test parameters (latest-everything | --skip_noninternal_primers --threeprime_adapters | singularity)
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Test parameters (latest-everything | --skip_noninternal_primers --threeprime_adapters | docker)
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Test parameters (latest-everything | --skip_fastp --skip_pangolin | docker)
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Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | singularity)
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Test parameters (latest-everything | --skip_fastp --skip_pangolin | singularity)
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Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | singularity)
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Test parameters (latest-everything | --skip_kraken2 | singularity)
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Test parameters (latest-everything | --skip_variants | singularity)
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Test parameters (latest-everything | --spades_mode corona | singularity)
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Test parameters (latest-everything | --skip_assembly | singularity)
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Test parameters (24.04.2 | --skip_variants | singularity)
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Test parameters (24.04.2 | --skip_kraken2 | singularity)
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Test parameters (24.04.2 | --skip_plasmidid false --skip_asciigenome | singularity)
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Test parameters (24.04.2 | --skip_noninternal_primers --threeprime_adapters | singularity)
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Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | singularity)
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Test parameters (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | conda)
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Test parameters (latest-everything | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | conda)
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Test parameters (latest-everything | --skip_noninternal_primers --threeprime_adapters | conda)
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Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | conda)
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Test parameters (latest-everything | --consensus_caller ivar | conda)
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Test parameters (latest-everything | --skip_kraken2 | conda)
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Test parameters (latest-everything | --skip_fastp --skip_pangolin | conda)
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Test parameters (latest-everything | --skip_variants | docker)
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Test parameters (latest-everything | --skip_kraken2 | docker)
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Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | docker)
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Test parameters (latest-everything | --spades_mode corona | docker)
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Test parameters (latest-everything | --skip_assembly | docker)
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Test parameters (latest-everything | --spades_mode metaviral | docker)
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Test parameters (latest-everything | --spades_mode metaviral | singularity)
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Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | conda)
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Test parameters (latest-everything | --consensus_caller ivar | singularity)
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Test parameters (24.04.2 | --skip_plasmidid false --skip_asciigenome | conda)
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Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | conda)
Canceling since a higher priority waiting request for 'nf-core CI-455' exists
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Test parameters (24.04.2 | --skip_noninternal_primers --threeprime_adapters | conda)
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Test parameters (24.04.2 | --spades_mode metaviral | conda)
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Test parameters (24.04.2 | --skip_assembly | docker)
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Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | docker)
Canceling since a higher priority waiting request for 'nf-core CI-455' exists
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Test parameters (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz | docker)
Canceling since a higher priority waiting request for 'nf-core CI-455' exists
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Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | singularity)
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Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-455' exists
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Test parameters (24.04.2 | --skip_noninternal_primers --threeprime_adapters | docker)
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Test nanopore (latest-everything | --gff false --freyja_depthcutoff 1 | singularity)
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Test parameters (24.04.2 | --skip_cutadapt --skip_snpeff | singularity)
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Test parameters (24.04.2 | --spades_mode metaviral | singularity)
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Test parameters (24.04.2 | --bowtie2_index ./GCA_009858895.3_ASM985889v3_genomic.200409.bt2.index.tar.gz | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-455' exists
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Test parameters (24.04.2 | --consensus_caller ivar | singularity)
Canceling since a higher priority waiting request for 'nf-core CI-455' exists
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Test parameters (latest-everything | --skip_cutadapt --skip_snpeff | conda)
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Test parameters (latest-everything | --skip_assembly | conda)
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Test parameters (latest-everything | --spades_mode corona | conda)
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Test parameters (latest-everything | --spades_mode metaviral | conda)
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Test parameters (latest-everything | --variant_caller bcftools --consensus_caller ivar | docker)
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Test parameters (24.04.2 | --consensus_caller ivar | conda)
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Test parameters (latest-everything | --consensus_caller ivar | docker)
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Test parameters (24.04.2 | --skip_assembly | conda)
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Test parameters (24.04.2 | --skip_cutadapt --skip_snpeff | conda)
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Test parameters (24.04.2 | --skip_kraken2 | conda)
Canceling since a higher priority waiting request for 'nf-core CI-455' exists
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Test parameters (24.04.2 | --skip_fastp --skip_pangolin | conda)
Canceling since a higher priority waiting request for 'nf-core CI-455' exists
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Test parameters (24.04.2 | --skip_variants | conda)
Canceling since a higher priority waiting request for 'nf-core CI-455' exists
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Test parameters (24.04.2 | --spades_mode corona | conda)
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Test parameters (24.04.2 | --skip_cutadapt --skip_snpeff | docker)
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Test parameters (24.04.2 | --consensus_caller ivar | docker)
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Test parameters (24.04.2 | --variant_caller bcftools --consensus_caller ivar | conda)
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Test parameters (24.04.2 | --skip_fastp --skip_pangolin | docker)
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Test parameters (24.04.2 | --skip_kraken2 | docker)
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Test parameters (24.04.2 | --skip_plasmidid false --skip_asciigenome | docker)
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Test parameters (24.04.2 | --spades_mode metaviral | docker)
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Test parameters (24.04.2 | --skip_variants | docker)
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Test parameters (24.04.2 | --spades_mode corona | docker)
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Test parameters (24.04.2 | --variant_caller bcftools --consensus_caller ivar | docker)
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Test parameters (24.04.2 | --skip_fastp --skip_pangolin | singularity)
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Test parameters (24.04.2 | --skip_assembly | singularity)
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Test parameters (latest-everything | --skip_variants | conda)
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Test parameters (24.04.2 | --spades_mode corona | singularity)
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Test parameters (24.04.2 | --variant_caller bcftools --consensus_caller ivar | singularity)
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Test nanopore (latest-everything | --input false --freyja_depthcutoff 1 | docker)
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Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
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Run pipeline with test data (latest-everything | test | conda)
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Test nanopore (24.04.2 | --min_barcode_reads 10000 | docker)
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Run pipeline with test data (24.04.2 | test | docker)
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Test nanopore (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | singularity)
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Run pipeline with test data (24.04.2 | test | conda)
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Test nanopore (latest-everything | --min_barcode_reads 10000 | docker)
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Test nanopore (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
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Test nanopore (24.04.2 | --min_guppyplex_reads 10000 | singularity)
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Test nanopore (latest-everything | --input false --freyja_depthcutoff 1 | singularity)
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Test nanopore (24.04.2 | --gff false --freyja_depthcutoff 1 | singularity)
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Test nanopore (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | conda)
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Test nanopore (latest-everything | --min_barcode_reads 10000 | conda)
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Test nanopore (latest-everything | --input false --freyja_depthcutoff 1 | conda)
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Test SISPA (24.04.2 | --genome 'NC_045512.2' | conda)
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Run pipeline with test data (latest-everything | test | singularity)
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Test nanopore (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | conda)
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Test nanopore (latest-everything | --gff false --freyja_depthcutoff 1 | conda)
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Test nanopore (24.04.2 | --min_barcode_reads 10000 | singularity)
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Test nanopore (latest-everything | --gff false --freyja_depthcutoff 1 | docker)
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Test SISPA (24.04.2 | --genome 'NC_045512.2' | docker)
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Test nanopore (24.04.2 | --gff false --freyja_depthcutoff 1 | docker)
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Test nanopore (24.04.2 | --input false --freyja_depthcutoff 1 | docker)
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Test SISPA (24.04.2 | --gff false | conda)
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Test nanopore (latest-everything | --min_guppyplex_reads 10000 | conda)
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Test SISPA (latest-everything | --genome 'NC_045512.2' | conda)
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Test nanopore (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | singularity)
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Test SISPA (latest-everything | --gff false | docker)
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Test nanopore (latest-everything | --min_guppyplex_reads 10000 | singularity)
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Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
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Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | docker)
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Test nanopore (24.04.2 | --min_barcode_reads 10000 | conda)
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Test SISPA (24.04.2 | --genome 'NC_045512.2' | singularity)
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Test SISPA (latest-everything | --gff false | conda)
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Test nanopore (24.04.2 | --min_guppyplex_reads 10000 | conda)
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Test SISPA (latest-everything | --genome 'NC_045512.2' | docker)
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Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | conda)
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Test nanopore (latest-everything | --min_guppyplex_reads 10000 | docker)
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Test SISPA (latest-everything | --genome 'NC_045512.2' | singularity)
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Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | docker)
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Test nanopore (latest-everything | --min_barcode_reads 10000 | singularity)
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Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | conda)
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Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | conda)
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Test SISPA (24.04.2 | --gff false | singularity)
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Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | conda)
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Run pipeline with test data (latest-everything | test | docker)
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Test nanopore (24.04.2 | --min_guppyplex_reads 10000 | docker)
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Run pipeline with test data (24.04.2 | test | singularity)
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Test nanopore (24.04.2 | --input false --freyja_depthcutoff 1 | singularity)
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Test SISPA (latest-everything | --gff false | singularity)
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Test nanopore (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | docker)
Canceling since a higher priority waiting request for 'nf-core CI-455' exists
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Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | singularity)
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Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | singularity)
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Test SISPA (24.04.2 | --gff false | docker)
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Test nanopore (24.04.2 | --input false --freyja_depthcutoff 1 | conda)
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Test nanopore (24.04.2 | --gff false --freyja_depthcutoff 1 | conda)
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Run pipeline with test data (latest-everything | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Run pipeline with test data (24.04.2 | test | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (24.04.2 | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (latest-everything | --min_barcode_reads 10000 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (latest-everything | --input false --freyja_depthcutoff 1 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test SISPA (24.04.2 | --genome 'NC_045512.2' | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (latest-everything | --additional_annotation ./GCA_009858895.3_ASM985889v3_genomic.gtf.gz --freyja_depthcutoff 1 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (latest-everything | --gff false --freyja_depthcutoff 1 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test SISPA (24.04.2 | --gff false | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (latest-everything | --min_guppyplex_reads 10000 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test SISPA (latest-everything | --genome 'NC_045512.2' | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (24.04.2 | --min_barcode_reads 10000 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test SISPA (latest-everything | --gff false | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (24.04.2 | --min_guppyplex_reads 10000 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --freyja_depthcutoff 1 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (24.04.2 | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (latest-everything | --artic_minion_caller medaka --sequencing_summary false --fast5_dir false --artic_minion_medaka_model ./r941_min_high_g360_model.hdf5 --freyja_depthcutoff 1 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (24.04.2 | --input false --freyja_depthcutoff 1 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|
|
Test nanopore (24.04.2 | --gff false --freyja_depthcutoff 1 | conda)
/home/runner/miniconda3/lib/python3.12/site-packages/conda/base/context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
|