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Dynamic listing of citations/references of used tools in MultiQC methods section #308

Merged
merged 26 commits into from
Jul 17, 2023
Merged

Dynamic listing of citations/references of used tools in MultiQC methods section #308

merged 26 commits into from
Jul 17, 2023

Commits on Jun 17, 2023

  1. Start adding dynamic citation insertion into methods description

    @jfy133
    jfy133 committed Jun 17, 2023
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  2. Add bibliography insert as well!

    @jfy133
    jfy133 committed Jun 17, 2023
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  3. Update changelog

    @jfy133
    jfy133 committed Jun 17, 2023
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  4. phrasing

    @jfy133
    jfy133 committed Jun 17, 2023
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Commits on Jun 18, 2023

  1. Apply suggestions from code review

    @jfy133
    jfy133 authored Jun 18, 2023
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  2. Update methods_description_template.yml

    @jfy133
    jfy133 authored Jun 18, 2023
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  3. Update methods_description_template.yml

    @jfy133
    jfy133 authored Jun 18, 2023
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Commits on Jun 25, 2023

  1. Fix filtlong formating in citations

    @jfy133
    jfy133 committed Jun 25, 2023
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Commits on Jul 7, 2023

  1. Merge branch 'dev' into print-tool-citations

    @jfy133
    jfy133 authored Jul 7, 2023
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Commits on Jul 12, 2023

  1. Fix comma space dot issue

    @jfy133
    jfy133 committed Jul 12, 2023
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  2. Add check for database header to close #310

    @jfy133
    jfy133 committed Jul 12, 2023
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  3. Remove empty lines

    @jfy133
    jfy133 committed Jul 12, 2023
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  4. No need to check outdir for existence - Nextflow can create it on demand 

    Signed-off-by: Rob Syme <[email protected]>
    @robsyme @jfy133
    robsyme authored and jfy133 committed Jul 12, 2023
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  5. Add support for virus -e

    @jfy133
    jfy133 committed Jul 12, 2023
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  6. Update taxpasta version and add ganon support

    @jfy133
    jfy133 committed Jul 12, 2023
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  7. Update CHANGELOG

    @jfy133
    jfy133 committed Jul 12, 2023
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  8. Merge branch 'dev' into print-tool-citations

    @jfy133
    jfy133 authored Jul 12, 2023
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  9. Fix changelog

    @jfy133
    jfy133 committed Jul 12, 2023
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  10. Start conmversoipn to lists

    @jfy133
    jfy133 committed Jul 12, 2023
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Commits on Jul 13, 2023

  1. Add filtlong citation

    @jfy133
    jfy133 committed Jul 13, 2023
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  2. Switch to list based with better replaceAll

    @jfy133
    jfy133 committed Jul 13, 2023
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  3. Finalise text with DOI links!

    @jfy133
    jfy133 committed Jul 13, 2023
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Commits on Jul 17, 2023

  1. Merge branch 'dev' into print-tool-citations

    @jfy133
    jfy133 authored Jul 17, 2023
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  2. Standardise and sync citation styles between citations.md and toolBib… 

    …liographyTesxzt
    @jfy133
    jfy133 committed Jul 17, 2023
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  3. Update Mp3 to MP4 citation

    @jfy133
    jfy133 committed Jul 17, 2023
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  4. And with citations

    @jfy133
    jfy133 committed Jul 17, 2023
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