Merge pull request #383 from LilyAnderssonLee/krakenuniq

update krakenuniq module
nf-core · Sep 28, 2023 · 84752d0 · 84752d0
2 parents aecc88b + 87ef35a
commit 84752d0
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,14 +3,22 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v1.2.0dev - [date]
+## v1.1.1 - Augmented Akita Patch [2023-09-28]
 
 ### `Added`
 
+- [#380](https://github.com/nf-core/taxprofiler/pull/380) Updated to nf-core pipeline template v2.10 (added by @LilyAnderssonLee & @sofstam)
+
 ### `Fixed`
 
+- [#383](https://github.com/nf-core/taxprofiler/pull/383) Update the module of KrakenUniq to the latest to account for edge case bugs where FASTQ input was mis-detected as wrong format (❤️ to @asafpr for reporting and solution, fixed by @LilyAnderssonLee)
+
 ### `Dependencies`
 
+| Tool       | Previous version | New version |
+| ---------- | ---------------- | ----------- |
+| KrakenUniq | 1.0.2            | 1.0.4       |
+
 ### `Deprecated`
 
 ## v1.1.0 - Augmented Akita [2023-09-19]

diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,7 +1,8 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/taxprofiler/releases/tag/dev" target="_blank">nf-core/taxprofiler</a>
+  This report has been generated by the <a href="https://github.com/nf-core/taxprofiler/releases/tag/1.1.1" target="_blank">nf-core/taxprofiler</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/taxprofiler/dev/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/taxprofiler/1.1.1/docs/output" target="_blank">documentation</a>.
+
 report_section_order:
   "nf-core-taxprofiler-methods-description":
     order: -1000

diff --git a/modules.json b/modules.json
@@ -143,7 +143,7 @@
                     },
                     "krakenuniq/preloadedkrakenuniq": {
                         "branch": "master",
-                        "git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
+                        "git_sha": "451df5258e0c03cb4e835bb02c22a9a31b44eb0d",
                         "installed_by": ["modules"]
                     },
                     "krona/ktimporttaxonomy": {

diff --git a/modules/nf-core/krakenuniq/preloadedkrakenuniq/main.nf b/modules/nf-core/krakenuniq/preloadedkrakenuniq/main.nf
diff --git a/modules/nf-core/krakenuniq/preloadedkrakenuniq/meta.yml b/modules/nf-core/krakenuniq/preloadedkrakenuniq/meta.yml
diff --git a/nextflow.config b/nextflow.config
@@ -368,7 +368,7 @@ manifest {
     description     = """Taxonomic classification and profiling of shotgun short- and long-read metagenomic data"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.2.0dev'
+    version         = '1.1.1'
     doi             = '10.5281/zenodo.7728364'
 }