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Add support for generating mag samplesheet #1888

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Add support for generating mag samplesheet

Add support for generating mag samplesheet #1888

Run time

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Job Run time
Run pipeline with test data (23.04.0, test)
18m 50s
Run pipeline with test data (23.04.0, test_nopreprocessing)
20m 44s
Run pipeline with test data (23.04.0, test_noprofiling)
9m 47s
Run pipeline with test data (23.04.0, test_krakenuniq)
9m 14s
Run pipeline with test data (23.04.0, test_malt)
7m 8s
Run pipeline with test data (23.04.0, test_motus)
29m 32s
Run pipeline with test data (23.04.0, test_falco)
5m 59s
Run pipeline with test data (23.04.0, test_fastp)
13m 41s
Run pipeline with test data (23.04.0, test_alternativepreprocessing)
15m 48s
Run pipeline with test data (23.04.0, test_bbduk)
12m 52s
Run pipeline with test data (23.04.0, test_prinseqplusplus)
11m 38s
Run pipeline with test data (latest-everything, test)
18m 32s
Run pipeline with test data (latest-everything, test_nopreprocessing)
18m 39s
Run pipeline with test data (latest-everything, test_noprofiling)
7m 54s
Run pipeline with test data (latest-everything, test_krakenuniq)
9m 1s
Run pipeline with test data (latest-everything, test_malt)
7m 35s
Run pipeline with test data (latest-everything, test_motus)
25m 32s
Run pipeline with test data (latest-everything, test_falco)
5m 26s
Run pipeline with test data (latest-everything, test_fastp)
12m 6s
Run pipeline with test data (latest-everything, test_alternativepreprocessing)
13m 18s
Run pipeline with test data (latest-everything, test_bbduk)
11m 53s
Run pipeline with test data (latest-everything, test_prinseqplusplus)
11m 30s
4h 56m 39s