changed the kraken2 channels

nf-core · Oct 28, 2024 · 6c55393 · 6c55393
1 parent c5edd67
commit 6c55393
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/subworkflows/local/phylogenetic_qc.nf b/subworkflows/local/phylogenetic_qc.nf
@@ -40,5 +40,5 @@ workflow PHYLOGENETIC_QC{
     )
 
     emit:
-    kraken2_report = KRAKEN2_KRAKEN2.out.report.map { meta, report -> [ report ] }.collect()
+    kraken2_report = KRAKEN2_KRAKEN2.out.report.collect()
 }
diff --git a/workflows/seqinspector.nf b/workflows/seqinspector.nf
@@ -47,7 +47,7 @@ workflow SEQINSPECTOR {
         ch_samplesheet
     )
 
-    ch_multiqc_files = ch_multiqc_files.mix(FASTQC.out.zip).mix(PHYLOGENETIC_QC.out.kraken2_report)
+    ch_multiqc_files = ch_multiqc_files.mix(FASTQC.out.zip).join(PHYLOGENETIC_QC.out.kraken2_report)
     ch_multiqc_files.view()
     ch_versions = ch_versions.mix(FASTQC.out.versions.first())
-Original file line number
+Diff line change
@@ Expand Up / @@ -40,5 +40,5 @@ workflow PHYLOGENETIC_QC{ @@
         )
         emit:
-        kraken2_report = KRAKEN2_KRAKEN2.out.report.map { meta, report -> [ report ] }.collect()
+        kraken2_report = KRAKEN2_KRAKEN2.out.report.collect()
     }