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fix: Run every sample and every DB
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edmundmiller committed Oct 29, 2024
1 parent a6565f7 commit 4af6dd4
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4 changes: 2 additions & 2 deletions modules/nf-core/fastqscreen/fastqscreen/main.nf

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3 changes: 1 addition & 2 deletions workflows/seqinspector.nf
Original file line number Diff line number Diff line change
Expand Up @@ -51,8 +51,7 @@ workflow SEQINSPECTOR {
.fromList(samplesheetToList(ch_databasesheet, "${projectDir}/assets/schema_database.json"))

FASTQSCREEN_FASTQSCREEN (
ch_samplesheet,
ch_databases,
ch_samplesheet.combine(ch_databases)
)
ch_multiqc_files = ch_multiqc_files.mix(FASTQSCREEN_FASTQSCREEN.out.txt)
ch_versions = ch_versions.mix(FASTQSCREEN_FASTQSCREEN.out.versions.first())
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