Make ids unique

nf-core · Sep 3, 2024 · 38e39a9 · 38e39a9
1 parent 8a43efa
commit 38e39a9
Showing 1 changed file with 10 additions and 2 deletions.
diff --git a/subworkflows/local/utils_nfcore_seqinspector_pipeline/main.nf b/subworkflows/local/utils_nfcore_seqinspector_pipeline/main.nf
@@ -87,9 +87,17 @@ workflow PIPELINE_INITIALISATION {
                 def tags = meta.tags ? meta.tags.tokenize(":") : []
                 def updated_meta = meta + [ id:meta.sample, tags:tags ]
                 if (!fastq_2) {
-                    return [ updated_meta.id, updated_meta + [ single_end:true ], [ fastq_1 ] ]
+                    return [
+                        updated_meta.id + fastq_1.toString().replaceAll('/', '_'),
+                        updated_meta + [ single_end:true ],
+                        [ fastq_1 ]
+                    ]
                 } else {
-                    return [ updated_meta.id, updated_meta + [ single_end:false ], [ fastq_1, fastq_2 ] ]
+                    return [
+                        updated_meta.id + fastq_1.toString().replaceAll('/', '_') + '_' + fastq_2.toString().replaceAll('/', '_'),
+                        updated_meta + [ single_end:false ],
+                        [ fastq_1, fastq_2 ]
+                    ]
                 }
         }
         .groupTuple()