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nf-core / sarek Public

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Merge branch 'master' into dev

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nf-core cloud full size tests on: pull_request_review 8

Run AWS full tests (test_aws, test, aws, TOWER_COMPUTE_ENV, TOWER_BUCKET_AWS)

Run AWS full tests (test_azure, test, azure, TOWER_CE_AZURE_CPU, TOWER_BUCKET_AZURE)

Run AWS full tests (test_full_aws, somatic, aws, TOWER_COMPUTE_ENV, TOWER_BUCKET_AWS)

Run AWS full tests (test_full_azure, somatic, azure, TOWER_CE_AZURE_CPU, TOWER_BUCKET_AZURE)

Run AWS full tests (test_full_germline_aws, germline, aws, TOWER_COMPUTE_ENV, TOWER_BUCKET_AWS)

Run AWS full tests (test_full_germline_azure, germline, azure, TOWER_CE_AZURE_CPU, TOWER_BUCKET_A...

Run AWS full tests (test_full_germline_ncbench_agilent, germline_ncbench_agilent, aws, TOWER_COMP...

nf-core linting on: pull_request 2

pre-commit

nf-core

pytest-workflow on: pull_request 2

Check for changes (pytest)

${{ matrix.tags }} ${{ matrix.profile }} NF ${{ matrix.NXF_VER }}

confirm-pass

nf-core CI on: pull_request 120

Test workflow | conda | 24.04.2 | 1/5

Test workflow | conda | 24.04.2 | 2/5

Test workflow | conda | 24.04.2 | 3/5

Test workflow | conda | 24.04.2 | 4/5

Test workflow | conda | 24.04.2 | 5/5

Test workflow | docker | 24.04.2 | 1/5

Test workflow | docker | 24.04.2 | 2/5

Test workflow | docker | 24.04.2 | 3/5

Test workflow | docker | 24.04.2 | 4/5

Test workflow | docker | 24.04.2 | 5/5

Test workflow | singularity | 24.04.2 | 1/5

Test workflow | singularity | 24.04.2 | 2/5

Test workflow | singularity | 24.04.2 | 3/5

Test workflow | singularity | 24.04.2 | 4/5

Test workflow | singularity | 24.04.2 | 5/5

Test function | conda | 24.04.2 | 1/5

Test function | conda | 24.04.2 | 2/5

Test function | conda | 24.04.2 | 3/5

Test function | conda | 24.04.2 | 4/5

Test function | conda | 24.04.2 | 5/5

Test function | docker | 24.04.2 | 1/5

Test function | docker | 24.04.2 | 2/5

Test function | docker | 24.04.2 | 3/5

Test function | docker | 24.04.2 | 4/5

Test function | docker | 24.04.2 | 5/5

Test function | singularity | 24.04.2 | 1/5

Test function | singularity | 24.04.2 | 2/5

Test function | singularity | 24.04.2 | 3/5

Test function | singularity | 24.04.2 | 4/5

Test function | singularity | 24.04.2 | 5/5

Test pipeline | conda | 24.04.2 | 1/5

Test pipeline | conda | 24.04.2 | 2/5

Test pipeline | conda | 24.04.2 | 3/5

Test pipeline | conda | 24.04.2 | 4/5

Test pipeline | conda | 24.04.2 | 5/5

Test pipeline | docker | 24.04.2 | 1/5

Test pipeline | docker | 24.04.2 | 2/5

Test pipeline | docker | 24.04.2 | 3/5

Test pipeline | docker | 24.04.2 | 4/5

Test pipeline | docker | 24.04.2 | 5/5

Test pipeline | singularity | 24.04.2 | 1/5

Test pipeline | singularity | 24.04.2 | 2/5

Test pipeline | singularity | 24.04.2 | 3/5

Test pipeline | singularity | 24.04.2 | 4/5

Test pipeline | singularity | 24.04.2 | 5/5

Test workflow | conda | latest-everything | 1/5

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Test workflow | conda | latest-everything | 3/5

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Test workflow | conda | latest-everything | 5/5

Test workflow | docker | latest-everything | 1/5

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Test workflow | docker | latest-everything | 4/5

Test workflow | docker | latest-everything | 5/5

Test workflow | singularity | latest-everything | 1/5

Test workflow | singularity | latest-everything | 2/5

Test workflow | singularity | latest-everything | 3/5

Test workflow | singularity | latest-everything | 4/5

Test workflow | singularity | latest-everything | 5/5

Test function | conda | latest-everything | 1/5

Test function | conda | latest-everything | 2/5

Test function | conda | latest-everything | 3/5

Test function | conda | latest-everything | 4/5

Test function | conda | latest-everything | 5/5

Test function | docker | latest-everything | 1/5

Test function | docker | latest-everything | 2/5

Test function | docker | latest-everything | 3/5

Test function | docker | latest-everything | 4/5

Test function | docker | latest-everything | 5/5

Test function | singularity | latest-everything | 1/5

Test function | singularity | latest-everything | 2/5

Test function | singularity | latest-everything | 3/5

Test function | singularity | latest-everything | 4/5

Test function | singularity | latest-everything | 5/5

Test pipeline | conda | latest-everything | 1/5

Test pipeline | conda | latest-everything | 2/5

Test pipeline | conda | latest-everything | 3/5

Test pipeline | conda | latest-everything | 4/5

Test pipeline | conda | latest-everything | 5/5

Test pipeline | docker | latest-everything | 1/5

Test pipeline | docker | latest-everything | 2/5

Test pipeline | docker | latest-everything | 3/5

Test pipeline | docker | latest-everything | 4/5

Test pipeline | docker | latest-everything | 5/5

Test pipeline | singularity | latest-everything | 1/5

Test pipeline | singularity | latest-everything | 2/5

Test pipeline | singularity | latest-everything | 3/5

Test pipeline | singularity | latest-everything | 4/5

Test pipeline | singularity | latest-everything | 5/5

nf-core branch protection on: pull_request_target 1

test

nf-core template version comment on: pull_request_target 1

template_version

Test successful pipeline download with 'nf-core pipelines download' on: pull_request_target 1

download

Test successful pipeline download with 'nf-core pipelines download' on: pull_request 1

download

nf-core CI on: push 30

Test workflow | docker | 24.04.2 | 1/5

Test workflow | docker | 24.04.2 | 2/5

Test workflow | docker | 24.04.2 | 3/5

Test workflow | docker | 24.04.2 | 4/5

Test workflow | docker | 24.04.2 | 5/5

Test function | docker | 24.04.2 | 1/5

Test function | docker | 24.04.2 | 2/5

Test function | docker | 24.04.2 | 3/5

Test function | docker | 24.04.2 | 4/5

Test function | docker | 24.04.2 | 5/5

Test pipeline | docker | 24.04.2 | 1/5

Test pipeline | docker | 24.04.2 | 2/5

Test pipeline | docker | 24.04.2 | 3/5

Test pipeline | docker | 24.04.2 | 4/5

Test pipeline | docker | 24.04.2 | 5/5

Test workflow | docker | latest-everything | 1/5

Test workflow | docker | latest-everything | 2/5

Test workflow | docker | latest-everything | 3/5

Test workflow | docker | latest-everything | 4/5

Test workflow | docker | latest-everything | 5/5

Test function | docker | latest-everything | 1/5

Test function | docker | latest-everything | 2/5

Test function | docker | latest-everything | 3/5

Test function | docker | latest-everything | 4/5

Test function | docker | latest-everything | 5/5

Test pipeline | docker | latest-everything | 1/5

Test pipeline | docker | latest-everything | 2/5

Test pipeline | docker | latest-everything | 3/5

Test pipeline | docker | latest-everything | 4/5

Test pipeline | docker | latest-everything | 5/5

nf-core linting on: push 2

pre-commit

nf-core

JUnit Test Report

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