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update zenodo link to point to latest #758

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Sep 23, 2022
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update zenodo link to point to latest #758

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60ea172
update zenodo link to point to latest
FriederikeHanssen Sep 23, 2022
2fe03ea
changelog
FriederikeHanssen Sep 23, 2022
2c9a57e
Merge branch 'dev' into doi
FriederikeHanssen Sep 23, 2022
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -47,6 +47,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#729](https://github.com/nf-core/sarek/pull/729) - Trailing commas in `--tools`, `--skip_tools` and `--use_gatk_spark` now raise failure cf [#722](https://github.com/nf-core/sarek/issues/722)
- [#741](https://github.com/nf-core/sarek/pull/741) - Fix prefix for `bcftools sort` for joint germline variant calling
- [#743](https://github.com/nf-core/sarek/pull/743) - Remove profile definitions in profile to avoid issues with Tower
- [#758](https://github.com/nf-core/sarek/pull/758) - Fix Zenodo batch

### Deprecated

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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -5,7 +5,7 @@
[![GitHub Actions CI Status](https://github.com/nf-core/sarek/workflows/nf-core%20CI/badge.svg)](https://github.com/nf-core/sarek/actions?query=workflow%3A%22nf-core+CI%22)
[![GitHub Actions Linting Status](https://github.com/nf-core/sarek/workflows/nf-core%20linting/badge.svg)](https://github.com/nf-core/sarek/actions?query=workflow%3A%22nf-core+linting%22)
[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/sarek/results)
[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.4945321-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.4945321-1073c8)
[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.3476426-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.3476425)

[![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A521.10.3-23aa62.svg)](https://www.nextflow.io/)
[![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/)
Expand Down Expand Up @@ -147,7 +147,7 @@ If you use `nf-core/sarek` for your analysis, please cite the `Sarek` article as

> Garcia M, Juhos S, Larsson M et al. **Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants [version 2; peer review: 2 approved]** _F1000Research_ 2020, 9:63 [doi: 10.12688/f1000research.16665.2](http://dx.doi.org/10.12688/f1000research.16665.2).

You can cite the sarek zenodo record for a specific version using the following [doi: 10.5281/zenodo.3476426](https://zenodo.org/badge/latestdoi/184289291)
You can cite the sarek zenodo record for a specific version using the following [doi: 10.5281/zenodo.3476425](https://zenodo.org/badge/latestdoi/3476425)

An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file.

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