Add troubleshooting section to docs with an entry on Spark issues #294
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
maxulysse
reviewed
Oct 20, 2020
maxulysse
reviewed
Oct 20, 2020
maxulysse
reviewed
Oct 20, 2020
maxulysse
reviewed
Oct 20, 2020
docs/usage.md
Outdated
|
|
||
| ### Spark related issues | ||
|
|
||
| If you have problems running processes that make use of Spark such as ```MarkDuplicates```. |
There was a problem hiding this comment.
Suggested change
| If you have problems running processes that make use of Spark such as ```MarkDuplicates```. | |
| If you have problems running processes that make use of Spark such as ```MarkDuplicates```. |
maxulysse
reviewed
Oct 20, 2020
maxulysse
reviewed
Oct 20, 2020
maxulysse
reviewed
Oct 20, 2020
maxulysse
reviewed
Oct 20, 2020
docs/usage.md
Outdated
|
|
||
| ```bash | ||
| * soft nofile 65535 | ||
| * hard nofile 65535 |
There was a problem hiding this comment.
Suggested change
| * hard nofile 65535 | |
| * hard nofile 65535 |
maxulysse
reviewed
Oct 20, 2020
docs/usage.md
Outdated
| OPTIONS=”—default-ulimit nofile=65535:65535" | ||
| ``` | ||
|
|
||
| Re-start your session. |
There was a problem hiding this comment.
Suggested change
| Re-start your session. | |
| Re-start your session. |
maxulysse
approved these changes
Oct 20, 2020
There was a problem hiding this comment.
I think we're good with markdownlint now.
Thanks @jfnavarro for the PR.
That's exactly what I had in mind.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
nf-core/sarek pull request
Many thanks for contributing to nf-core/sarek!
Please fill in the appropriate checklist below (delete whatever is not relevant).
These are the most common things requested on pull requests (PRs).
PR checklist
docsis updatedLearn more about contributing: CONTRIBUTING.md