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Add Subworkflow Build_Indices for switch to DSL2 #238

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merged 7 commits into from
Jul 15, 2020

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FriederikeHanssen
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Add subworklow for building indices

nf-core/sarek pull request

Many thanks for contributing to nf-core/sarek!

Please fill in the appropriate checklist below (delete whatever is not relevant).
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  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
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  • Ensure the test suite passes (nextflow run . -profile test,docker).
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@FriederikeHanssen FriederikeHanssen changed the title Add index Add Subworkflow Build_Indices for switch to DSL2 Jul 15, 2020
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ggabernet commented Jul 15, 2020

The simple test does not pass now any more

@FriederikeHanssen FriederikeHanssen requested a review from a team July 15, 2020 13:40
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yay! test test passes again :)

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Looks good to me! Indices are being built :) Maybe let's let @maxulysse have a look if he's fine with it?

@FriederikeHanssen FriederikeHanssen marked this pull request as ready for review July 15, 2020 13:48
## [dsl2](https://github.com/nf-core/sarek/tree/dev)

- [#238](https://github.com/nf-core/sarek/pull/238) -Add subworkflow for building all the indices

## [dev](https://github.com/nf-core/sarek/tree/dev)

- [#234](https://github.com/nf-core/sarek/pull/234) -Switching to DSL2
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Maybe move this line to DSL2 too, no?

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will do in the next PR coming :)

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It's amazing

@ggabernet ggabernet merged commit 65ea8da into nf-core:dsl2 Jul 15, 2020
@maxulysse maxulysse added the DSL2 label Jan 26, 2021
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3 participants