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Fix some Sentieon issues#178

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maxulysse merged 18 commits intonf-core:devnf-core/sarek:devfrom maxulysse:Sentieonmaxulysse/nf-core_sarek:SentieonCopy head branch name to clipboardApr 22, 2020

+103-65

Commits

Commits on Apr 3, 2020

• save dedup bam and recal table

  maxulysse

  committed
  dfc0be8

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Commits on Apr 7, 2020

• enable restart from recalibrate with sentieon

  maxulysse

  committed
  828717d

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• simplify tsvpath handling

  maxulysse

  committed
  a8fb155

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Commits on Apr 8, 2020

• Merge remote-tracking branch 'upstream/dev' into Sentieon

  maxulysse

  committed
  f6f7001

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• fix bamSentieonTSV.into issue

  maxulysse

  committed
  0b45238

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Commits on Apr 9, 2020

• refactor sentieon channel names

  maxulysse

  committed
  c69e81b

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Commits on Apr 15, 2020

• Merge remote-tracking branch 'upstream/dev' into Sentieon

  maxulysse

  committed
  2e1d9fe

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• rename tsv files for Sentieon

  maxulysse

  committed
  08fa021

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• forgot some conflicts

  maxulysse

  committed
  7aa0b85

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• Merge remote-tracking branch 'upstream/dev' into Sentieon

  maxulysse

  committed
  b6037d8

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Commits on Apr 17, 2020

• Merge remote-tracking branch 'upstream/dev' into Sentieon

  maxulysse

  committed
  77410fe

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• fix merge issue

  maxulysse

  committed
  397842f

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• use deduped bam for Sentieon tools

  maxulysse

  committed
  72a9dca

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• update CHANGELOG

  maxulysse

  committed
  a4b47d2

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• fix input for Sentieon TNscope

  maxulysse

  committed
  428036b

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Commits on Apr 21, 2020

• fix nf-core#192

  maxulysse

  committed
  281e252

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• Merge remote-tracking branch 'upstream/dev' into Sentieon

  maxulysse

  committed
  f6eb93d

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Commits on Apr 22, 2020

• Merge branch 'dev' into Sentieon

  maxulysse

  authored
  b17313e

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