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Preprint #1158

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merged 2 commits into from
Jul 21, 2023
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Preprint #1158

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9dbbcf1
prettier
FriederikeHanssen Jul 21, 2023
6a0490f
Merge branch 'dev' into preprint
maxulysse Jul 21, 2023
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -12,6 +12,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#1130](https://github.com/nf-core/sarek/pull/1130) - Back to dev
- [#1013](https://github.com/nf-core/sarek/pull/1013) - Mutect2 multi sample mode with `--joint_mutect2`
- [#1153](https://github.com/nf-core/sarek/pull/1153) - Add input validation for Sentieon & FGBio UMI incompatibility
- [#1158](https://github.com/nf-core/sarek/pull/1158) - Add preprint

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2 changes: 2 additions & 0 deletions README.md
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Expand Up @@ -179,6 +179,8 @@ For further information or help, don't hesitate to get in touch on the [Slack `#

If you use `nf-core/sarek` for your analysis, please cite the `Sarek` article as follows:

> Friederike Hanssen, Maxime U Garcia, Lasse Folkersen, Anders Sune Pedersen, Francesco Lescai, Susanne Jodoin, Edmund Miller, Oskar Wacker, Nicholas Smith, nf-core community, Gisela Gabernet, Sven Nahnsen **Scalable and efficient DNA sequencing analysis on different compute infrastructures aiding variant discovery** _bioRxiv_ [doi: 10.1101/2023.07.19.549462](https://doi.org/10.1101/2023.07.19.549462).

> Garcia M, Juhos S, Larsson M et al. **Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants [version 2; peer review: 2 approved]** _F1000Research_ 2020, 9:63 [doi: 10.12688/f1000research.16665.2](http://dx.doi.org/10.12688/f1000research.16665.2).

You can cite the sarek zenodo record for a specific version using the following [doi: 10.5281/zenodo.3476425](https://doi.org/10.5281/zenodo.3476425)
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