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https://nf-co.re/launch for Sarek fails when e.g. "samplesheet.csv" is provided in for --input. This should pass the regular expression .csv$.
Possibly only needs one \ in nextflow_schema.json:
"input": {
"type": "string",
"format": "file-path",
"mimetype": "text/csv",
"pattern": "\\.csv$",
"schema": "assets/schema_input.json",
"description": "Path to comma-separated file containing information about the samples in the experiment.",
"help_text": "A design file with information about the samples in your experiment. Use this parameter to specify the location of the input files. It has to be a comma-separated file with a header row. See [usage docs](https://nf-co.re/sarek/usage#input).\n\nIf no input file is specified, sarek will attempt to locate one in the `{outdir}` directory.",
"fa_icon": "fas fa-file-csv"
},
Command used and terminal output
No response
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered:
Description of the bug
https://nf-co.re/launch for Sarek fails when e.g. "samplesheet.csv" is provided in for
--input
. This should pass the regular expression.csv$
.Possibly only needs one
\
in nextflow_schema.json:Command used and terminal output
No response
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered: