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README.md edited
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Patricie34 committed Jan 8, 2025
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Expand Up @@ -62,6 +62,7 @@ Depending on the options and samples provided, the pipeline can currently perfor
- `Strelka2`
- `TIDDIT`
- `Lofreq`
- Post-variant calling options (`BCFtools concat` for germline vcfs, `BCFtools norm` for all vcfs)
- Variant filtering and annotation (`SnpEff`, `Ensembl VEP`, `BCFtools annotate`)
- Summarise and represent QC (`MultiQC`)

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