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update CHANGELOG
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maxulysse committed Sep 26, 2022
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8 changes: 5 additions & 3 deletions CHANGELOG.md
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Expand Up @@ -48,12 +48,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
- [#741](https://github.com/nf-core/sarek/pull/741) - Fix prefix for `bcftools sort` for joint germline variant calling
- [#743](https://github.com/nf-core/sarek/pull/743) - Remove profile definitions in profile to avoid issues with Tower
- [#758](https://github.com/nf-core/sarek/pull/758) - Fix Zenodo batch
- [#760](https://github.com/nf-core/sarek/pull/760) - Fix CHANGELOG dependencies

### Deprecated

### Removed

- [#742](https://github.com/nf-core/sarek/pull/742) - Removed some lines from the usage-doc as Sarek no longer support input supplied as a list of multiple csv-files
- [#757](https://github.com/nf-core/sarek/pull/757) - Remove `errorStrategy` in `conf/modules.config`

## [3.0.1](https://github.com/nf-core/sarek/releases/tag/3.0.1) - Saiva

Expand Down Expand Up @@ -231,7 +233,7 @@ Skierfe is a mountain in the Sarek national park, and the inspiration for the lo
| `bwa` | 0.7.17 | unchanged |
| `cancerit-allelecount` | 4.0.2 | 4.3.0 |
| `cnvkit` | 0.9.6 | 0.9.9 |
| `control-freec` | 11.6 | 11.6 |
| `control-freec` | 11.6 | unchanged |
| `deepvariant` | added | 1.3.0 |
| `dragmap` | added | 1.2.1 |
| `ensembl-vep` | 99.2 | 106.1 |
Expand All @@ -246,7 +248,7 @@ Skierfe is a mountain in the Sarek national park, and the inspiration for the lo
| `llvm-openmp` | 8.0.1 | removed |
| `manta` | 1.6.0 | unchanged |
| `markdown` | 3.1.1 | removed |
| `mosdepth` | 0.3.3 | 0.3.3 |
| `mosdepth` | 0.3.3 | unchanged |
| `msisensor-pro` | 1.1.a | 1.2.0 |
| `msisensor` | 0.5 | removed |
| `multiqc` | 1.8 | 1.13a |
Expand All @@ -262,7 +264,7 @@ Skierfe is a mountain in the Sarek national park, and the inspiration for the lo
| `samtools` | 1.9 | 1.15.1 |
| `sed` | added | 4.7 |
| `snpeff` | 4.3.1t | 5.1 |
| `strelka` | 2.9.10 | 2.9.10 |
| `strelka` | 2.9.10 | unchanged |
| `svdb` | added | 2.6.1 |
| `tabix` | added | 1.11 |
| `tiddit` | 2.7.1 | 3.1.0 |
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