Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/dedup --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:53:44 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:55:44 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:57:21 GMT+0000 (Coordinated Universal Time)

sentieon_dnascope_joint_germline docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_dnascope_joint_germline --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:54:28 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:56:31 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:58:09 GMT+0000 (Coordinated Universal Time)

sentieon_dnascope_skip_filter docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_dnascope_skip_filter --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:54:51 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:56:22 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:57:39 GMT+0000 (Coordinated Universal Time)

sentieon/dedup docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/dedup --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:54:09 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:56:21 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:57:57 GMT+0000 (Coordinated Universal Time)

sentieon_dnascope_skip_filter docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_dnascope_skip_filter --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:54:58 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:57:24 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:59:22 GMT+0000 (Coordinated Universal Time)

sentieon_dnascope_joint_germline docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_dnascope_joint_germline --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:54:45 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:57:25 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:59:33 GMT+0000 (Coordinated Universal Time)

sentieon_haplotyper_skip_filter docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_haplotyper_skip_filter --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:56:23 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:58:23 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:59:56 GMT+0000 (Coordinated Universal Time)

sentieon_haplotyper_joint_germline docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_haplotyper_joint_germline --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:55:50 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:57:44 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 12:59:25 GMT+0000 (Coordinated Universal Time)

sentieon_haplotyper_skip_filter docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_haplotyper_skip_filter --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:56:31 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:59:14 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:01:16 GMT+0000 (Coordinated Universal Time)

sentieon_haplotyper_joint_germline docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon_haplotyper_joint_germline --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:56:19 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:59:47 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:02:35 GMT+0000 (Coordinated Universal Time)

sentieon/dnascope docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/dnascope --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:54:06 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 12:59:11 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:04:04 GMT+0000 (Coordinated Universal Time)

sentieon/haplotyper docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/haplotyper --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:54:58 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:00:38 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:06:01 GMT+0000 (Coordinated Universal Time)

sentieon/haplotyper docker NF latest-everything

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/haplotyper --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:55:52 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:01:33 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:06:49 GMT+0000 (Coordinated Universal Time)

sentieon/dnascope docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag sentieon/dnascope --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:54:16 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:03:14 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:11:55 GMT+0000 (Coordinated Universal Time)

freebayes docker NF 23.04.0

Process returned exit code 1 Launched as "TMPDIR=~ PROFILE=docker pytest --tag freebayes --symlink --kwdof --git-aware --color=yes" Launched at "/home/runner/work/sarek/sarek" Attempts exhausted, made 3 attempts : Attempt #1 started at : 12:51:52 GMT+0000 (Coordinated Universal Time) Attempt #2 started at : 13:05:15 GMT+0000 (Coordinated Universal Time) Attempt #3 started at : 13:17:09 GMT+0000 (Coordinated Universal Time)

confirm-pass

Process completed with exit code 1.

sentieon/dedup docker NF latest-everything

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

sentieon_dnascope_joint_germline docker NF 23.04.0