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feat: Add linting of FASTQ with FQ/LINT #6647

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feat: Add linting of FASTQ with FQ/LINT

feat: Add linting of FASTQ with FQ/LINT #6647

Triggered via pull request December 17, 2024 17:28
@adamrtalbotadamrtalbot
synchronize #1763
adamrtalbot:add_fq_lint_to_pipeline
Status Failure
Total duration 29m 57s
Artifacts –

ci.yml

on: pull_request
Matrix: test
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38 errors and 60 warnings
Test function | docker | latest-everything | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test function | docker | 24.04.2 | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test function | docker | 24.04.2 | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test workflow | docker | latest-everything | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test workflow | docker | 24.04.2 | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test workflow | docker | latest-everything | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test workflow | docker | latest-everything | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test workflow | docker | 24.04.2 | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test function | docker | 24.04.2 | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test function | docker | latest-everything | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test workflow | docker | 24.04.2 | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test function | docker | 24.04.2 | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test workflow | docker | 24.04.2 | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test function | docker | latest-everything | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test function | docker | 24.04.2 | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test function | docker | latest-everything | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test workflow | docker | latest-everything | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test workflow | docker | 24.04.2 | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | latest-everything | 2/5
Process completed with exit code 1.
Test pipeline | docker | latest-everything | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | 24.04.2 | 2/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | 24.04.2 | 2/5
Process completed with exit code 1.
Test pipeline | docker | 24.04.2 | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | 24.04.2 | 5/5
Process completed with exit code 1.
Test pipeline | docker | latest-everything | 1/5
Process completed with exit code 1.
Test pipeline | docker | latest-everything | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | 24.04.2 | 1/5
Process completed with exit code 1.
Test pipeline | docker | 24.04.2 | 1/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | 24.04.2 | 3/5
Process completed with exit code 1.
Test pipeline | docker | 24.04.2 | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test workflow | docker | latest-everything | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test function | docker | latest-everything | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | 24.04.2 | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | latest-everything | 5/5
Process completed with exit code 1.
Test pipeline | docker | latest-everything | 5/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | latest-everything | 3/5
Process completed with exit code 1.
Test pipeline | docker | latest-everything | 3/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test pipeline | docker | latest-everything | 4/5
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration - https://docs.github.com/rest/checks/runs#create-a-check-run)
Test function | docker | latest-everything | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | latest-everything | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test function | docker | 24.04.2 | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | 24.04.2 | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test function | docker | 24.04.2 | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | 24.04.2 | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test workflow | docker | latest-everything | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | latest-everything | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test workflow | docker | 24.04.2 | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | 24.04.2 | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test workflow | docker | latest-everything | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | latest-everything | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test workflow | docker | latest-everything | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | latest-everything | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test workflow | docker | 24.04.2 | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | 24.04.2 | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test function | docker | 24.04.2 | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | 24.04.2 | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test function | docker | latest-everything | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | latest-everything | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test workflow | docker | 24.04.2 | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | 24.04.2 | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test function | docker | 24.04.2 | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | 24.04.2 | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test workflow | docker | 24.04.2 | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | 24.04.2 | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test function | docker | latest-everything | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | latest-everything | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test function | docker | 24.04.2 | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | 24.04.2 | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test function | docker | latest-everything | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | latest-everything | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test workflow | docker | latest-everything | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | latest-everything | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test workflow | docker | 24.04.2 | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | 24.04.2 | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | latest-everything | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | 24.04.2 | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 2/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | 24.04.2 | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | latest-everything | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | 24.04.2 | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 1/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | 24.04.2 | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test workflow | docker | latest-everything | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | latest-everything | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test function | docker | latest-everything | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | latest-everything | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | 24.04.2 | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | latest-everything | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 5/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | latest-everything | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 3/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Test pipeline | docker | latest-everything | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 4/5
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23