Release 3.5.0 #217

Job	Run time
Check for changes (pytest)	5s
umi docker NF 24.04.2	7m 34s
umi docker NF latest-everything	7m 11s
fastp docker NF 24.04.2	9m 24s
fastp docker NF latest-everything	9m 29s
intervals docker NF 24.04.2	10m 47s
intervals docker NF latest-everything	10m 48s
gatk4spark docker NF 24.04.2	9m 43s
gatk4spark docker NF latest-everything	11m 18s
cnvkit docker NF 24.04.2	13m 52s
cnvkit docker NF latest-everything	13m 51s
deepvariant docker NF 24.04.2	7m 25s
deepvariant docker NF latest-everything	7m 33s
freebayes docker NF 24.04.2	17m 47s
freebayes docker NF latest-everything	17m 20s
haplotypecaller docker NF 24.04.2	7m 26s
haplotypecaller docker NF latest-everything	7m 10s
haplotypecaller_skip_filter docker NF 24.04.2	5m 57s
haplotypecaller_skip_filter docker NF latest-everything	5m 35s
joint_germline docker NF 24.04.2	8m 13s
manta docker NF 24.04.2	10m 11s
manta docker NF latest-everything	10m 9s
mpileup docker NF 24.04.2	9m 26s
mpileup docker NF latest-everything	9m 13s
msisensorpro docker NF 24.04.2	5m 58s
msisensorpro docker NF latest-everything	6m 4s
mutect2 docker NF 24.04.2	13m 12s
mutect2 docker NF latest-everything	12m 59s
lofreq docker NF 24.04.2	9m 8s
lofreq docker NF latest-everything	8m 52s
tiddit docker NF 24.04.2	7m 46s
tiddit docker NF latest-everything	7m 44s
concatenate_vcfs docker NF 24.04.2	9m 50s
concatenate_vcfs docker NF latest-everything	9m 43s
ngscheckmate docker NF 24.04.2	4m 47s
ngscheckmate docker NF latest-everything	5m 18s
confirm-pass	1s
	5h 28m 49s

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