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Merge pull request #1754 from FriederikeHanssen/fixtest #6626

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Merge pull request #1754 from FriederikeHanssen/fixtest

Merge pull request #1754 from FriederikeHanssen/fixtest #6626

Triggered via push December 11, 2024 16:42
@FriederikeHanssenFriederikeHanssen
pushed b02c77b
dev
Status Success
Total duration 4m 44s
Artifacts –

ci.yml

on: push
Matrix: test
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25 errors and 30 warnings
Test pipeline when starting from markduplicates.Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step markduplicates --skip_tools markduplicates --tools null : Test pipeline when starting from markduplicates#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline when starting from prepare recalibration.Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step prepare_recalibration --tools null : Test pipeline when starting from prepare recalibration#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools controlfreec | tumoronly | stub: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools strelka --no_intervals | somatic: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline when starting from markduplicates.Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step markduplicates --skip_tools markduplicates --tools null : Test pipeline when starting from markduplicates#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline when starting from recalibration.Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step recalibrate --tools null : Test pipeline when starting from recalibration#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools controlfreec | somatic: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools manta,strelka --no_intervals | somatic: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test sentieon.stub: Test sentieon#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline when starting from prepare recalibration.Run with profile test | --input tests/csv/3.0/mapped_single_bam.csv --step prepare_recalibration --tools null : Test pipeline when starting from prepare recalibration#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools controlfreec --no_intervals | tumoronly: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --input tests/csv/3.0/fastq_pair.csv: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools strelka --only_paired_variant_calling: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools manta,strelka | somatic: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline when starting from recalibration.Run with profile test | --input tests/csv/3.0/mapped_single_cram.csv --step recalibrate --tools null : Test pipeline when starting from recalibration#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools controlfreec --no_intervals | somatic | stub: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools strelka | somatic: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools controlfreec --no_intervals | tumoronly: Test pipeline#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline.Run with profile test | --tools strelka --no_intervals | somatic: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools strelka | somatic: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --input tests/csv/3.0/fastq_pair.csv: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools strelka --only_paired_variant_calling: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools manta,strelka | somatic: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline.Run with profile test | --tools controlfreec | somatic: Test pipeline#L1
Assertion failed: 1 of 2 assertions failed
Test pipeline.Run with profile test | --tools manta,strelka --no_intervals | somatic: Test pipeline#L1
Assertion failed: 2 of 2 assertions failed
Test pipeline | docker | 24.04.2 | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | 24.04.2 | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | latest-everything | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | 24.04.2 | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | 24.04.2 | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | latest-everything | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | latest-everything | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | latest-everything | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | 24.04.2 | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | 24.04.2 | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | latest-everything | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | latest-everything | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | 24.04.2 | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | 24.04.2 | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | latest-everything | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | latest-everything | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | 24.04.2 | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | 24.04.2 | 4/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test pipeline | docker | latest-everything | 3/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | 24.04.2 | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | latest-everything | 5/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test workflow | docker | latest-everything | 1/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test function | docker | 24.04.2 | 2/5
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636