Release 3.5.0 #206
FriederikeHanssenpytest.yml
on: pull_request
Check for changes (pytest)
3s
Matrix: pytest
confirm-pass
0s
Annotations
7 errors and 37 warnings
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haplotypecaller_skip_filter docker NF latest-everything
Process returned exit code 1
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 12:52:34 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 12:55:19 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 12:57:16 GMT+0000 (Coordinated Universal Time)
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haplotypecaller_skip_filter docker NF 24.04.2
Process returned exit code 1
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 12:54:19 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 12:57:15 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 12:58:57 GMT+0000 (Coordinated Universal Time)
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haplotypecaller docker NF 24.04.2
Process returned exit code 1
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 12:54:08 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 12:58:24 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 13:00:43 GMT+0000 (Coordinated Universal Time)
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haplotypecaller docker NF latest-everything
Process returned exit code 1
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 12:54:21 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 12:58:41 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 13:00:59 GMT+0000 (Coordinated Universal Time)
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fastp docker NF 24.04.2
Process returned exit code 1
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 12:52:19 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 12:58:07 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 13:02:44 GMT+0000 (Coordinated Universal Time)
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fastp docker NF latest-everything
Process returned exit code 1
Launched as "bash --noprofile --norc -eo pipefail /home/runner/work/_actions/Wandalen/wretry.action/v1.4.10_js_action/src/script.sh"
Launched at "/home/runner/work/sarek/sarek"
Attempts exhausted, made 3 attempts :
Attempt #1 started at : 12:54:12 GMT+0000 (Coordinated Universal Time)
Attempt #2 started at : 13:00:05 GMT+0000 (Coordinated Universal Time)
Attempt #3 started at : 13:04:35 GMT+0000 (Coordinated Universal Time)
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confirm-pass
Process completed with exit code 1.
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Check for changes (pytest)
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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deepvariant docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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deepvariant docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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concatenate_vcfs docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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concatenate_vcfs docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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haplotypecaller_skip_filter docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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gatk4spark docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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lofreq docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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joint_germline docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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haplotypecaller_skip_filter docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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mpileup docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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intervals docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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intervals docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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manta docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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cnvkit docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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gatk4spark docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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haplotypecaller docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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cnvkit docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
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haplotypecaller docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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msisensorpro docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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lofreq docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
msisensorpro docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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ngscheckmate docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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ngscheckmate docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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manta docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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freebayes docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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freebayes docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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fastp docker NF 24.04.2
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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mpileup docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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tiddit docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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umi docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
fastp docker NF latest-everything
No files were found with the provided path: /home/ubuntu/pytest_workflow_*/*/.nextflow.log
/home/ubuntu/pytest_workflow_*/*/log.out
/home/ubuntu/pytest_workflow_*/*/log.err
/home/ubuntu/pytest_workflow_*/*/work
!/home/ubuntu/pytest_workflow_*/*/work/conda
!/home/ubuntu/pytest_workflow_*/*/work/singularity
!/home/runner/work/sarek/sarek/.singularity. No artifacts will be uploaded.
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|
tiddit docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
umi docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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mutect2 docker NF latest-everything
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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mutect2 docker NF 24.04.2
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|