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Always upload logs after trying to launch AWS megatests #165

Merged
merged 1 commit into from
Jun 21, 2024
Merged

Always upload logs after trying to launch AWS megatests #165

merged 1 commit into from
Jun 21, 2024

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adamrtalbot
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Not sure why the logs aren't uploading. This should fix it but might break linting 🤷

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/proteinfold branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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github-actions bot commented Jun 20, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 4f89eb7

+| ✅ 194 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗  10 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • nextflow_config - Config manifest.version should end in dev: 1.1.0
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 2.14.1
  • Run at 2024-06-20 11:16:12

JoseEspinosa
JoseEspinosa approved these changes Jun 21, 2024
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@JoseEspinosa JoseEspinosa left a comment

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Thanks @adamrtalbot!
@mirpedrol should I create a PR to update the template?

@JoseEspinosa JoseEspinosa merged commit d2d5ff6 into dev Jun 21, 2024
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@mirpedrol should I create a PR to update the template?

That would be great, thanks!

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@JoseEspinosa JoseEspinosa JoseEspinosa approved these changes

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@adamrtalbot @mirpedrol @JoseEspinosa