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Merging template 2.13.1 #134

Merged
merged 7 commits into from
Mar 6, 2024
Merged

Merging template 2.13.1 #134

merged 7 commits into from
Mar 6, 2024

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JoseEspinosa
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Template version 2.13.1 merge.

PR checklist

  • This comment contains a description of changes (with reason).
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • CHANGELOG.md is updated.

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github-actions bot commented Mar 5, 2024 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 8d4448f

+| ✅ 186 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   9 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: .github/ISSUE_TEMPLATE/bug_report.yml
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml
  • multiqc_config - multiqc_config

✅ Tests passed:

Run details

  • nf-core/tools version 2.13.1
  • Run at 2024-03-06 11:32:04

@JoseEspinosa JoseEspinosa merged commit 45b44b8 into nf-core:dev Mar 6, 2024
7 checks passed
@JoseEspinosa JoseEspinosa deleted the merging-template-2.13.1 branch March 6, 2024 14:46
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@luisas luisas luisas approved these changes

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@JoseEspinosa @luisas @nf-core-bot