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Important! Template update for nf-core/tools v2.9 #136

Merged
merged 8 commits into from
Jul 3, 2023
Merged

Important! Template update for nf-core/tools v2.9 #136

merged 8 commits into from
Jul 3, 2023

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nf-core-bot
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Version 2.9 of nf-core/tools has just been released with updates to the nf-core template. This automated pull-request attempts to apply the relevant updates to this pipeline.

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-2.9 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see https://nf-co.re/developers/sync.

For more information about this release of nf-core/tools, please see the v2.9 release page.

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github-actions bot commented Jul 3, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit e25b905

+| ✅ 153 tests passed       |+
#| ❔   1 tests were ignored |#
!| ❗   6 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • nextflow_config - Config manifest.version should end in dev: 1.0.0
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: Add full-sized test dataset and amend the paragraph below if applicable
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/nf-core-pangenome_logo_light.png

✅ Tests passed:

Run details

  • nf-core/tools version 2.9
  • Run at 2023-07-03 13:58:18

@subwaystation subwaystation merged commit 793c502 into dev Jul 3, 2023
@heuermh heuermh deleted the nf-core-template-merge-2.9 branch February 22, 2024 16:13
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@nf-core-bot @subwaystation