fixed the fancy naming

main.nf

@@ -37,31 +37,31 @@ if (!params.file_name_prefix) {
 } else if (params.file_name_prefix == "pggb") {
   // fancy naming scheme
   file_name_prefix_display = ".pggb"
-  alignment_prefix = """-\
-  ${aligner}-\
-  s${params.alignment_segment_length}-\
-  l${params.alignment_block_length}-\
-  p${params.alignment_map_pct_id}-\
-  n${params.alignment_n_secondary}-\
-  ${edyeet_align_pct_id_display}\
-  K${params.alignment_mash_kmer}\
-  ${alignment_merge_cmd}\
-  ${alignment_split_cmd}\
-  ${alignment_exclude_cmd}\
-  """.stripIndent()
-  seqwish_prefix = """\
-  .seqwish-\
-  k${params.seqwish_min_match_length}-\
-  B${params.seqwish_transclose_batch}\
-  """.stripIndent()
-  smoothxg_prefix = """${seqwish_prefix}\
-  .smoothxg-\
-  w${params.smoothxg_max_block_weight}-\
-  j${params.smoothxg_max_path_jump}-\
-  e${params.smoothxg_max_edge_jump}-\
-  I${params.smoothxg_block_id_min}-\
-  p${smoothxg_poa_params_display}-M-J0.7-K-G150\
-  """.stripIndent()
+alignment_prefix = """-\
+${aligner}-\
+s${params.alignment_segment_length}-\
+l${params.alignment_block_length}-\
+p${params.alignment_map_pct_id}-\
+n${params.alignment_n_secondary}-\
+${edyeet_align_pct_id_display}\
+K${params.alignment_mash_kmer}\
+${alignment_merge_cmd}\
+${alignment_split_cmd}\
+${alignment_exclude_cmd}\
+"""
+seqwish_prefix = """${alignment_prefix}\
+.seqwish-\
+k${params.seqwish_min_match_length}-\
+B${params.seqwish_transclose_batch}\
+"""
+smoothxg_prefix = """${seqwish_prefix}\
+.smoothxg-\
+w${params.smoothxg_max_block_weight}-\
+j${params.smoothxg_max_path_jump}-\
+e${params.smoothxg_max_edge_jump}-\
+I${params.smoothxg_block_id_min}-\
+p${smoothxg_poa_params_display}-M-J0.7-K-G150\
+"""
 } else {
   // take the given prefix
   file_name_prefix_display= "${params.file_name_prefix}.pggb"