pangenome 1.1.2 - canguro #4
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: nf-core AWS full size tests | |
| # This workflow is triggered on published releases. | |
| # It can be additionally triggered manually with GitHub actions workflow dispatch button. | |
| # It runs the -profile 'test_full' on AWS batch | |
| on: | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| jobs: | |
| run-tower: | |
| name: Run AWS full tests | |
| if: github.repository == 'nf-core/pangenome' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Launch workflow via tower | |
| uses: seqeralabs/action-tower-launch@v2 | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} | |
| revision: ${{ github.sha }} | |
| workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/pangenome/work-${{ github.sha }} | |
| parameters: | | |
| { | |
| "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | |
| "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/pangenome/results-${{ github.sha }}" | |
| } | |
| profiles: test_full | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: Tower debug log file | |
| path: | | |
| tower_action_*.log | |
| tower_action_*.json |