Fix abritamr/run

[sateeshperi]

• Fix language server issues
• add stub + test
• update version
• update to seqera containers

[famosab]

Few questions but looks good in general :)

[famosab]

why can't you just assert
process.out.versions?

[SPPearce]

This is an alternative option that shows in the nf-test the actual content, which is actually more useful than the md5sum.

[famosab]

ahh been looking for that for a while - we did want to use that in the stub section, right?

[famosab]

I thought this file is optional? Is it always present in the test runs though?

[famosab]

For the stub why not just do

Suggested change

	assertAll(
	{ assert snapshot(
	process.out.matches,
	process.out.partials,
	process.out.virulence,
	process.out.out,
	process.out.txt,
	process.out.versions,
	path(process.out.versions[0]).yaml
	).match() },
	{ assert snapshot(process.out).match() }