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Add FASTQE module #6914

Merged
merged 5 commits into from
Oct 31, 2024
Merged

Add FASTQE module #6914

merged 5 commits into from
Oct 31, 2024

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adamrtalbot
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@adamrtalbot adamrtalbot commented Oct 30, 2024

Adds FASTQE, arguably the most important module.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@adamrtalbot
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@nf-core-bot fix linting

@adamrtalbot adamrtalbot enabled auto-merge October 31, 2024 09:20
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@maxulysse maxulysse left a comment

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Best contribution ever

@adamrtalbot adamrtalbot added this pull request to the merge queue Oct 31, 2024
modules/nf-core/fastqe/meta.yml Outdated Show resolved Hide resolved
@adamrtalbot adamrtalbot removed this pull request from the merge queue due to a manual request Oct 31, 2024
@maxulysse maxulysse enabled auto-merge October 31, 2024 10:38
@maxulysse maxulysse added this pull request to the merge queue Oct 31, 2024
Merged via the queue into nf-core:master with commit cab0b8f Oct 31, 2024
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@adamrtalbot adamrtalbot deleted the add_fastqe_module branch November 1, 2024 11:36
@edmundmiller edmundmiller mentioned this pull request Nov 13, 2024
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3 participants