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add regressive, fix tcoffee and consensus #6802
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Minor comments
def prefix = task.ext.prefix ?: "${meta.id}" | ||
def tree_args = tree ? "-regtree $tree" : "" | ||
def template_args = template ? "-template_file $template" : "" | ||
def outfile = compress ? "stdout" : "${prefix}.aln" |
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Equal sign alignment
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LGTM, just fix the CI issues
PR checklist
Add regressive module
Update T-coffee module - remove the fix that was implemented for the regressive for compression, since now it is its own module.
Update consensus module to also provide evaluation outputs
versions.yml
file.label
nf-core modules test <MODULE> --profile docker
nf-core modules test <MODULE> --profile singularity
nf-core modules test <MODULE> --profile conda
nf-core subworkflows test <SUBWORKFLOW> --profile docker
nf-core subworkflows test <SUBWORKFLOW> --profile singularity
nf-core subworkflows test <SUBWORKFLOW> --profile conda