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Consider using the automated tool to facilitate this https://nf-co.re/docs/contributing/modules#migrating-from-pytest-to-nf-test
bcftools/stats
ensemblvep/download
gatk4 mutect2
manta/germline
manta/somatic
manta/tumoronly
sentieon/applyvarcal
strelka/germline
strelka/somatic
tiddit/sv
vcftools
No response
The text was updated successfully, but these errors were encountered:
freebayes was already ported: https://github.com/nf-core/modules/tree/master/modules/nf-core/freebayes
freebayes
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controlfreec-makegraph2
controlfreec-makegraph
controlfreec-assesssignificance
controlfreec-freec2bed
controlfreec-freec
cnvkit/antitarget
cnvkit/reference
gatk4/calculatecontamination
gatk4/applyvqsr
gatk4-filtermutectcalls
gatk4/createsequencedictionary
gatk4/mergemutectstats
gatk4/getpileupsummaries
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Consider using the automated tool to facilitate this https://nf-co.re/docs/contributing/modules#migrating-from-pytest-to-nf-test
Is your feature request related to a problem? Please describe
bcftools/stats
to nf-test #5255ensemblvep/download
to nf-test #5364gatk4 mutect2
to nf-test #5242manta/germline
to nf-test #5360manta/somatic
to nf-test #5308manta/tumoronly
to nf-test #5361sentieon/applyvarcal
tests to nf-test #5223strelka/germline
to nf-test #5338strelka/somatic
to nf-test #5318tiddit/sv
to nf-test #5365vcftools
to nf-test #5374Describe the solution you'd like
No response
Describe alternatives you've considered
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Additional context
No response
The text was updated successfully, but these errors were encountered: