Fix linting and output file

nf-core · Mar 26, 2024 · 4de8bab · 4de8bab
1 parent 1b8b5b5
commit 4de8bab
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Showing 3 changed files with 7 additions and 3 deletions.
diff --git a/modules/nf-core/genomescope2/main.nf b/modules/nf-core/genomescope2/main.nf
@@ -18,7 +18,7 @@ process GENOMESCOPE2 {
     tuple val(meta), path("${prefix}_model.txt")                  , emit: model
     tuple val(meta), path("${prefix}_summary.txt")                , emit: summary
     tuple val(meta), path("${prefix}_lookup_table.txt")           , emit: lookup_table, optional: true
-    tuple val(meta), path("${prefix}_fitted_histogram.png")       , emit: fitted_histogram_png, optional: true
+    tuple val(meta), path("${prefix}_fitted_hist.png")            , emit: fitted_histogram_png, optional: true
     path "versions.yml"                                           , emit: versions
 
     when:

diff --git a/modules/nf-core/genomescope2/meta.yml b/modules/nf-core/genomescope2/meta.yml
@@ -64,6 +64,10 @@ output:
       type: file
       description: Fitted histogram lookup table
       pattern: "*_lookup_table.txt"
+  - fitted_histogram_png:
+      type: file
+      description: A genomescope2 fitted histogram plot in PNG format
+      pattern: "*_fitted_hist.png"
 authors:
   - "@mahesh-panchal"
 maintainers:

diff --git a/modules/nf-core/genomescope2/tests/main.nf.test b/modules/nf-core/genomescope2/tests/main.nf.test
@@ -1,5 +1,3 @@
-// TODO nf-core: Once you have added the required tests, please run the following command to build this file:
-// nf-core modules test genomescope2
 nextflow_process {
 
     name "Test Process GENOMESCOPE2"
@@ -10,6 +8,8 @@ nextflow_process {
     tag "modules"
     tag "modules_nfcore"
     tag "genomescope2"
+    tag "meryl/count"
+    tag "meryl/histogram"
 
     setup {
         run('MERYL_COUNT'){