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Feat/pb-fq2bammeth #451

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3 changes: 3 additions & 0 deletions conf/base.config
Original file line number Diff line number Diff line change
Expand Up @@ -52,6 +52,9 @@ process {
withLabel:process_high_memory {
memory = { 200.GB * task.attempt }
}
withLabel:process_gpu {
ext.use_gpu = { use_gpu }
}
withLabel:error_ignore {
errorStrategy = 'ignore'
}
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5 changes: 5 additions & 0 deletions modules.json
Original file line number Diff line number Diff line change
Expand Up @@ -80,6 +80,11 @@
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"parabricks/fq2bammeth": {
"branch": "master",
"git_sha": "21a84fbbaa559b64892b7cff687139effffa8222",
"installed_by": ["modules"]
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
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68 changes: 68 additions & 0 deletions modules/nf-core/parabricks/fq2bammeth/main.nf

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95 changes: 95 additions & 0 deletions modules/nf-core/parabricks/fq2bammeth/meta.yml

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11 changes: 11 additions & 0 deletions modules/nf-core/parabricks/fq2bammeth/nextflow.config

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122 changes: 122 additions & 0 deletions modules/nf-core/parabricks/fq2bammeth/tests/main.nf.test

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