use gpu profile in tests config

nf-core · Dec 11, 2024 · 099fd57 · 099fd57
1 parent 18119ab
commit 099fd57
Show file tree

Hide file tree

Showing 2 changed files with 7 additions and 1 deletion.
diff --git a/.github/workflows/nf-test-gpu.yml b/.github/workflows/nf-test-gpu.yml
@@ -68,7 +68,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        profile: [docker_self_hosted, singularity]
+        profile: [gpu]
         shard: ${{ fromJson(needs.get-shards.outputs.shard) }}
         NXF_VER:
           - "24.10.2"

diff --git a/tests/nextflow.config b/tests/nextflow.config
@@ -27,6 +27,12 @@ process {
 }
 
 profiles {
+    gpu {
+        docker.runOptions       = '-u $(id -u):$(id -g) --gpus all'
+        apptainer.runOptions    = '--nv'
+        singularity.runOptions  = '--nv'
+        use_gpu                 = true
+    }
     docker_self_hosted {
         docker.enabled      = true
         docker.fixOwnership = true