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Add exists to Schema #743

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Add exists to Schema

Add exists to Schema #743

Triggered via pull request August 28, 2023 22:49
@edmundmilleredmundmiller
synchronize #342
schema-exists
Status Cancelled
Total duration 1m 53s
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ci.yml

on: pull_request
Choose nextflow versions to test against depending on target branch
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Choose nextflow versions to test against depending on target branch
Matrix: Run pipeline with test data
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20 errors
Bismark Hisat Single-End: Bismark Hisat Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/516571ef1a0ace9548076c68c097da45/output/bismark_hisat/reference_genome/BismarkIndex
Bismark Hisat Single-End With Index: Bismark Hisat Single-End With Index#L1
Assertion failed: assert workflow.success | | workflow false
Bismark Hisat Single-End With RRBS: Bismark Hisat Single-End With RRBS#L1
Assertion failed: 13 of 13 assertions failed
Bismark Hisat Single-End With RRBS With Index: Bismark Hisat Single-End With RRBS With Index#L1
Assertion failed: assert workflow.success | | workflow false
Run pipeline with test data (latest-everything, bismark_hisat, docker)
Process completed with exit code 1.
Run pipeline with test data (latest-everything, bismark_hisat, docker)
Process completed with exit code 1.
Bwameth Single-End: Bwameth Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/bd398dfb432492c55351d70617e5f74d/output/bwameth/reference_genome/bwameth
Bwameth Single-End With Index: Bwameth Single-End With Index#L1
Assertion failed: assert workflow.success | | workflow false
Bwameth Single-End RRBS: Bwameth Single-End RRBS#L1
Assertion failed: 7 of 7 assertions failed
Bwameth Single End RRBS With Index: Bwameth Single End RRBS With Index#L1
Assertion failed: assert workflow.success | | workflow false
Run pipeline with test data (latest-everything, bwameth, docker)
Process completed with exit code 1.
Run pipeline with test data (latest-everything, bwameth, docker)
Process completed with exit code 1.
Bismark Single-End: Bismark Single-End#L1
java.nio.file.NoSuchFileException: /home/runner/work/methylseq/methylseq/.nf-test/tests/76e3f1e3d670957ab6a1a2e6f3042831/output/bismark/reference_genome/BismarkIndex
Bismark Single-End With Index: Bismark Single-End With Index#L1
Assertion failed: assert workflow.success | | workflow false
Bismark Single-End With RRBS: Bismark Single-End With RRBS#L1
Assertion failed: 13 of 13 assertions failed
Bismark Single-End With RRBS With Index: Bismark Single-End With RRBS With Index#L1
Assertion failed: assert workflow.success | | workflow false
Bismark Single-End NOMe-seq: Bismark Single-End NOMe-seq#L1
Assertion failed: 16 of 16 assertions failed
Bismark Clip R1 - 2: Bismark Clip R1 - 2#L1
Assertion failed: 16 of 16 assertions failed
Run pipeline with test data (latest-everything, bismark, docker)
Canceling since a higher priority waiting request for 'nf-core CI-342' exists
Run pipeline with test data (latest-everything, bismark, docker)
The operation was canceled.