Update plot_markers scripts

nf-core · Dec 5, 2024 · a43634a · a43634a
1 parent d6350fa
commit a43634a
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Showing 3 changed files with 5 additions and 2 deletions.
diff --git a/bin/plot_markers1.R b/bin/plot_markers1.R
@@ -1,3 +1,5 @@
+#!/usr/bin/env Rscript
+
 # load libraries
 require(RIdeogram)
 

diff --git a/bin/plot_markers2.R b/bin/plot_markers2.R
@@ -1,3 +1,4 @@
+#!/usr/bin/env Rscript
 
 # load libraries
 require(RIdeogram)

diff --git a/modules/local/genome_ideogram.nf b/modules/local/genome_ideogram.nf
@@ -24,10 +24,10 @@ process GENOME_BUSCO_IDEOGRAM {
     seqkit fx2tab -i -n -l ${genome} > ${prefix}_for_karyotype.txt
     
     # Call script for table wrangling
-    Rscript plot_markers1.R ${prefix}_for_karyotype.txt ${prefix}
+    Rscript /home/ucbtfrd/pipelines/genomeqc/bin/plot_markers1.R ${prefix}_for_karyotype.txt ${prefix}
 
     # Call script for plotting
-    Rscript plot_markers2.R ${prefix}_karyotype.txt ${prefix}_busco_coordinates.txt ${prefix}
+    Rscript /home/ucbtfrd/pipelines/genomeqc/bin/plot_markers2.R ${prefix}_karyotype.txt ${prefix}_busco_coordinates.txt ${prefix}
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":